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RBM38 (RNA binding motif protein 38)

Identity

Other namesHSRNASEB
RNPC1
SEB4B
SEB4D
dJ800J21.2
HGNC (Hugo) RBM38
LocusID (NCBI) 55544
Location 20q13.31
Location_base_pair Starts at 55966454 and ends at 55984386 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)RBM38   15818
Entrez_Gene (NCBI)RBM38  55544  RNA binding motif protein 38
Cards
GeneCards (Weizmann)RBM38
Ensembl (Hinxton)ENSG00000132819 [Gene_View]  chr20:55966454-55984386 [Contig_View]  RBM38 [Vega]
AceView (NCBI)RBM38
Genatlas (Paris)RBM38
SOURCE (Stanford)NM_017495 NM_183425
Genomic and cartography
GoldenPath (UCSC)RBM38  -  20q13.31   chr20:55966454-55984386 +  20q13.31   [Description]    (hg19-Feb_2009)
EnsemblRBM38 - 20q13.31 [CytoView]
Mapping of homologs : NCBIRBM38 [Mapview]
OMIM612428   
Gene and transcription
Genbank (Entrez)AF432218 BC018711 DB504051 DN998561 DQ891994
RefSeq transcript (SRS)NM_017495 NM_183425
RefSeq transcript (Entrez)NM_017495 NM_183425
RefSeq genomic (SRS)AC_000152 NC_000020 NC_018931 NT_011362 NW_001838666 NW_004078102
RefSeq genomic (Entrez)AC_000152 NC_000020 NC_018931 NT_011362 NW_001838666 NW_004078102
Consensus coding sequences : CCDS (NCBI)RBM38
Cluster EST : UnigeneHs.236361 [ SRS ] Hs.236361 [ NCBI ]
CGAP (NCI)Hs.236361
Alternative Splicing : Fast-db (Paris)GSHG0018859
Alternative Splicing GalleryENSG00000132819
Gene ExpressionRBM38 [ NCBI-GEO ]   RBM38 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0Z9 (SRS) Q9H0Z9 (Uniprot)
NextProtQ9H0Z9
With graphics : InterProQ9H0Z9
Splice isoforms : SwissVarQ9H0Z9(Swissvar)
Domaine pattern : Prosite (SRS)RRM (PS50102)   
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (SRS)Nucleotide-bd_a/b_plait    RRM_dom   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Related proteins : CluSTrQ9H0Z9
Domain families : Pfam (SRS)RRM_1 (PF00076)   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
DMDM55544
Blocks (Seattle)Q9H0Z9
PDB (SRS)2CQD   
PDB (PDBSum)2CQD   
PDB (IMB)2CQD   
PDB (RSDB)2CQD   
Human Protein AtlasENSG00000132819
HPRD15268
IPIIPI00306057   IPI00374855   IPI00640966   IPI00927190   IPI00974044   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0Z9
IntAct (EBI)Q9H0Z9
FunCoupENSG00000132819
REACTOMERBM38
Protein Interaction Database55544
BioGRIDRBM38
InParanoidQ9H0Z9
Interologous Interaction database Q9H0Z9
IntegromeDBRBM38
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RBM38
SNP (GeneSNP Utah)RBM38
SNP : HGBaseRBM38
Genetic variants : HAPMAPRBM38
Somatic Mutations in Cancer : COSMICRBM38 
CONAN: Copy Number AnalysisRBM38 
Mutations and Diseases : HGMDRBM38
OMIM612428   
GENETests612428   
Disease Genetic AssociationRBM38
Huge Navigator RBM38 [HugePedia]  RBM38 [HugeCancerGEM]
Genomic VariantsRBM38  RBM38 [DGVbeta]
snp3D : Map Gene to Disease55544
General knowledge
Homologs : HomoloGeneRBM38
Homology/Alignments : Family Browser (UCSC)RBM38
Phylogenetic Trees/Animal Genes : TreeFamRBM38
Chemical/Protein Interactions : CTD55544
Chemical/Pharm GKB GenePA34449
Clinical trialRBM38
Cancer Resource (Charite)ENSG00000132819
Ontology : AmiGOnucleotide binding  mRNA binding  mRNA binding  mRNA 3'-UTR binding  nucleus  nucleus  cytosol  cytosol  mRNA processing  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator  cell cycle  cell cycle arrest  cell cycle arrest  negative regulation of cell proliferation  RNA splicing  regulation of myotube differentiation  cell differentiation  regulation of RNA splicing  3'-UTR-mediated mRNA stabilization  
Ontology : EGO-EBInucleotide binding  mRNA binding  mRNA binding  mRNA 3'-UTR binding  nucleus  nucleus  cytosol  cytosol  mRNA processing  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator  cell cycle  cell cycle arrest  cell cycle arrest  negative regulation of cell proliferation  RNA splicing  regulation of myotube differentiation  cell differentiation  regulation of RNA splicing  3'-UTR-mediated mRNA stabilization  
Other databases
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
PubGeneRBM38
iHOPRBM38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:37:33 CEST 2013
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