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RBM38 (RNA binding motif protein 38)

Identity

Alias_namesRNPC1
RNA-binding region (RNP1
Alias_symbol (synonym)HSRNASEB
SEB4D
seb4B
dJ800J21.2
Other aliasSEB4B
HGNC (Hugo) RBM38
LocusID (NCBI) 55544
Atlas_Id 52714
Location 20q13.31  [Link to chromosome band 20q13]
Location_base_pair Starts at 57391398 and ends at 57409330 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BMP7 (20q13.31) / RBM38 (20q13.31)RBM38 (20q13.31) / RAE1 (20q13.31)RBM38 (20q13.31) / SPO11 (20q13.31)
BMP7 20q13.31 / RBM38 20q13.31RBM38 20q13.31 / RAE1 20q13.31RBM38 20q13.31 / SPO11 20q13.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM38   15818
Cards
Entrez_Gene (NCBI)RBM38  55544  RNA binding motif protein 38
AliasesHSRNASEB; RNPC1; SEB4B; SEB4D; 
dJ800J21.2
GeneCards (Weizmann)RBM38
Ensembl hg19 (Hinxton)ENSG00000132819 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132819 [Gene_View]  chr20:57391398-57409330 [Contig_View]  RBM38 [Vega]
ICGC DataPortalENSG00000132819
TCGA cBioPortalRBM38
AceView (NCBI)RBM38
Genatlas (Paris)RBM38
WikiGenes55544
SOURCE (Princeton)RBM38
Genetics Home Reference (NIH)RBM38
Genomic and cartography
GoldenPath hg38 (UCSC)RBM38  -     chr20:57391398-57409330 +  20q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM38  -     20q13.31   [Description]    (hg19-Feb_2009)
EnsemblRBM38 - 20q13.31 [CytoView hg19]  RBM38 - 20q13.31 [CytoView hg38]
Mapping of homologs : NCBIRBM38 [Mapview hg19]  RBM38 [Mapview hg38]
OMIM612428   
Gene and transcription
Genbank (Entrez)AF432218 BC018711 BE840212 BF371746 BM549757
RefSeq transcript (Entrez)NM_001291780 NM_017495 NM_183425
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBM38
Cluster EST : UnigeneHs.236361 [ NCBI ]
CGAP (NCI)Hs.236361
Alternative Splicing GalleryENSG00000132819
Gene ExpressionRBM38 [ NCBI-GEO ]   RBM38 [ EBI - ARRAY_EXPRESS ]   RBM38 [ SEEK ]   RBM38 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM38 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55544
GTEX Portal (Tissue expression)RBM38
Human Protein AtlasENSG00000132819-RBM38 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0Z9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0Z9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0Z9
Splice isoforms : SwissVarQ9H0Z9
PhosPhoSitePlusQ9H0Z9
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM38
DMDM Disease mutations55544
Blocks (Seattle)RBM38
PDB (SRS)2CQD   
PDB (PDBSum)2CQD   
PDB (IMB)2CQD   
PDB (RSDB)2CQD   
Structural Biology KnowledgeBase2CQD   
SCOP (Structural Classification of Proteins)2CQD   
CATH (Classification of proteins structures)2CQD   
SuperfamilyQ9H0Z9
Human Protein Atlas [tissue]ENSG00000132819-RBM38 [tissue]
Peptide AtlasQ9H0Z9
HPRD15268
IPIIPI00306057   IPI00374855   IPI00640966   IPI00927190   IPI00974044   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0Z9
IntAct (EBI)Q9H0Z9
FunCoupENSG00000132819
BioGRIDRBM38
STRING (EMBL)RBM38
ZODIACRBM38
Ontologies - Pathways
QuickGOQ9H0Z9
Ontology : AmiGORNA binding  mRNA binding  nucleus  cytosol  mRNA processing  cell cycle  RNA splicing  regulation of myotube differentiation  cell differentiation  regulation of RNA splicing  
Ontology : EGO-EBIRNA binding  mRNA binding  nucleus  cytosol  mRNA processing  cell cycle  RNA splicing  regulation of myotube differentiation  cell differentiation  regulation of RNA splicing  
NDEx NetworkRBM38
Atlas of Cancer Signalling NetworkRBM38
Wikipedia pathwaysRBM38
Orthology - Evolution
OrthoDB55544
GeneTree (enSembl)ENSG00000132819
Phylogenetic Trees/Animal Genes : TreeFamRBM38
HOVERGENQ9H0Z9
HOGENOMQ9H0Z9
Homologs : HomoloGeneRBM38
Homology/Alignments : Family Browser (UCSC)RBM38
Gene fusions - Rearrangements
Fusion : MitelmanBMP7/RBM38 [20q13.31/20q13.31]  [t(20;20)(q13;q13)]  
Fusion : MitelmanRBM38/RAE1 [20q13.31/20q13.31]  [t(20;20)(q13;q13)]  
Fusion : MitelmanRBM38/SPO11 [20q13.31/20q13.31]  [t(20;20)(q13;q13)]  
Fusion: TCGA_MDACCBMP7 20q13.31 RBM38 20q13.31 OV
Fusion: TCGA_MDACCRBM38 20q13.31 RAE1 20q13.31 BRCA
Fusion: TCGA_MDACCRBM38 20q13.31 SPO11 20q13.31 BRCA
Tumor Fusion PortalRBM38
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM38
dbVarRBM38
ClinVarRBM38
1000_GenomesRBM38 
Exome Variant ServerRBM38
ExAC (Exome Aggregation Consortium)ENSG00000132819
GNOMAD BrowserENSG00000132819
Genetic variants : HAPMAP55544
Genomic Variants (DGV)RBM38 [DGVbeta]
DECIPHERRBM38 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM38 
Mutations
ICGC Data PortalRBM38 
TCGA Data PortalRBM38 
Broad Tumor PortalRBM38
OASIS PortalRBM38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM38  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM38
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM38
DgiDB (Drug Gene Interaction Database)RBM38
DoCM (Curated mutations)RBM38 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM38 (select a term)
intoGenRBM38
Cancer3DRBM38(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612428   
Orphanet
DisGeNETRBM38
MedgenRBM38
Genetic Testing Registry RBM38
NextProtQ9H0Z9 [Medical]
TSGene55544
GENETestsRBM38
Target ValidationRBM38
Huge Navigator RBM38 [HugePedia]
snp3D : Map Gene to Disease55544
BioCentury BCIQRBM38
ClinGenRBM38
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55544
Chemical/Pharm GKB GenePA34449
Clinical trialRBM38
Miscellaneous
canSAR (ICR)RBM38 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM38
EVEXRBM38
GoPubMedRBM38
iHOPRBM38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:31:56 CET 2017

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