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RBM38 (RNA binding motif protein 38)

Identity

Alias (NCBI)HSRNASEB
RNPC1
SEB4B
SEB4D
dJ800J21.2
HGNC (Hugo) RBM38
HGNC Alias symbHSRNASEB
SEB4D
seb4B
dJ800J21.2
HGNC Previous nameRNPC1
HGNC Previous nameRNA-binding region (RNP1, RRM) containing 1
LocusID (NCBI) 55544
Atlas_Id 52714
Location 20q13.31  [Link to chromosome band 20q13]
Location_base_pair Starts at 57391396 and ends at 57409330 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BMP7 (20q13.31) / RBM38 (20q13.31)RBM38 (20q13.31) / RAE1 (20q13.31)RBM38 (20q13.31) / SPO11 (20q13.31)
BMP7 20q13.31 / RBM38 20q13.31RBM38 20q13.31 / RAE1 20q13.31RBM38 20q13.31 / SPO11 20q13.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RBM38   15818
Cards
Entrez_Gene (NCBI)RBM38    RNA binding motif protein 38
AliasesHSRNASEB; RNPC1; SEB4B; SEB4D; 
dJ800J21.2
GeneCards (Weizmann)RBM38
Ensembl hg19 (Hinxton)ENSG00000132819 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132819 [Gene_View]  ENSG00000132819 [Sequence]  chr20:57391396-57409330 [Contig_View]  RBM38 [Vega]
ICGC DataPortalENSG00000132819
TCGA cBioPortalRBM38
AceView (NCBI)RBM38
Genatlas (Paris)RBM38
SOURCE (Princeton)RBM38
Genetics Home Reference (NIH)RBM38
Genomic and cartography
GoldenPath hg38 (UCSC)RBM38  -     chr20:57391396-57409330 +  20q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM38  -     20q13.31   [Description]    (hg19-Feb_2009)
GoldenPathRBM38 - 20q13.31 [CytoView hg19]  RBM38 - 20q13.31 [CytoView hg38]
ImmunoBaseENSG00000132819
Genome Data Viewer NCBIRBM38 [Mapview hg19]  
OMIM612428   
Gene and transcription
Genbank (Entrez)AF432218 BC018711 BE840212 BF371746 BM549757
RefSeq transcript (Entrez)NM_001291780 NM_017495 NM_183425
Consensus coding sequences : CCDS (NCBI)RBM38
Gene ExpressionRBM38 [ NCBI-GEO ]   RBM38 [ EBI - ARRAY_EXPRESS ]   RBM38 [ SEEK ]   RBM38 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM38 [ Firebrowse - Broad ]
GenevisibleExpression of RBM38 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55544
GTEX Portal (Tissue expression)RBM38
Human Protein AtlasENSG00000132819-RBM38 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0Z9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0Z9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0Z9
PhosPhoSitePlusQ9H0Z9
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM38
PDB (RSDB)2CQD    6JVX    6JVY   
PDB Europe2CQD    6JVX    6JVY   
PDB (PDBSum)2CQD    6JVX    6JVY   
PDB (IMB)2CQD    6JVX    6JVY   
Structural Biology KnowledgeBase2CQD    6JVX    6JVY   
SCOP (Structural Classification of Proteins)2CQD    6JVX    6JVY   
CATH (Classification of proteins structures)2CQD    6JVX    6JVY   
SuperfamilyQ9H0Z9
AlphaFold pdb e-kbQ9H0Z9   
Human Protein Atlas [tissue]ENSG00000132819-RBM38 [tissue]
HPRD15268
Protein Interaction databases
DIP (DOE-UCLA)Q9H0Z9
IntAct (EBI)Q9H0Z9
BioGRIDRBM38
STRING (EMBL)RBM38
ZODIACRBM38
Ontologies - Pathways
QuickGOQ9H0Z9
Ontology : AmiGORNA binding  mRNA binding  protein binding  nucleus  cytosol  mRNA processing  cell cycle  RNA splicing  regulation of myotube differentiation  cell differentiation  regulation of RNA splicing  
Ontology : EGO-EBIRNA binding  mRNA binding  protein binding  nucleus  cytosol  mRNA processing  cell cycle  RNA splicing  regulation of myotube differentiation  cell differentiation  regulation of RNA splicing  
NDEx NetworkRBM38
Atlas of Cancer Signalling NetworkRBM38
Wikipedia pathwaysRBM38
Orthology - Evolution
OrthoDB55544
GeneTree (enSembl)ENSG00000132819
Phylogenetic Trees/Animal Genes : TreeFamRBM38
Homologs : HomoloGeneRBM38
Homology/Alignments : Family Browser (UCSC)RBM38
Gene fusions - Rearrangements
Fusion : MitelmanBMP7/RBM38 [20q13.31/20q13.31]  
Fusion : MitelmanRBM38/RAE1 [20q13.31/20q13.31]  
Fusion : MitelmanRBM38/SPO11 [20q13.31/20q13.31]  
Fusion : QuiverRBM38
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM38
dbVarRBM38
ClinVarRBM38
MonarchRBM38
1000_GenomesRBM38 
Exome Variant ServerRBM38
GNOMAD BrowserENSG00000132819
Varsome BrowserRBM38
ACMGRBM38 variants
VarityQ9H0Z9
Genomic Variants (DGV)RBM38 [DGVbeta]
DECIPHERRBM38 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM38 
Mutations
ICGC Data PortalRBM38 
TCGA Data PortalRBM38 
Broad Tumor PortalRBM38
OASIS PortalRBM38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM38  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRBM38
Mutations and Diseases : HGMDRBM38
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRBM38
DgiDB (Drug Gene Interaction Database)RBM38
DoCM (Curated mutations)RBM38
CIViC (Clinical Interpretations of Variants in Cancer)RBM38
Cancer3DRBM38
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612428   
Orphanet
DisGeNETRBM38
MedgenRBM38
Genetic Testing Registry RBM38
NextProtQ9H0Z9 [Medical]
GENETestsRBM38
Target ValidationRBM38
Huge Navigator RBM38 [HugePedia]
ClinGenRBM38
Clinical trials, drugs, therapy
MyCancerGenomeRBM38
Protein Interactions : CTDRBM38
Pharm GKB GenePA34449
PharosQ9H0Z9
Clinical trialRBM38
Miscellaneous
canSAR (ICR)RBM38
HarmonizomeRBM38
DataMed IndexRBM38
Probes
Litterature
PubMed54 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRBM38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:28:28 CEST 2021

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