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RBM42 (RNA binding motif protein 42)

Identity

Alias_symbol (synonym)MGC10433
Other alias-
HGNC (Hugo) RBM42
LocusID (NCBI) 79171
Atlas_Id 72525
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 35629016 and ends at 35637686 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FBRSL1 (12q24.33) / RBM42 (19q13.12)UBP1 (3p22.3) / RBM42 (19q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM42   28117
Cards
Entrez_Gene (NCBI)RBM42  79171  RNA binding motif protein 42
Aliases
GeneCards (Weizmann)RBM42
Ensembl hg19 (Hinxton)ENSG00000126254 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126254 [Gene_View]  chr19:35629016-35637686 [Contig_View]  RBM42 [Vega]
ICGC DataPortalENSG00000126254
TCGA cBioPortalRBM42
AceView (NCBI)RBM42
Genatlas (Paris)RBM42
WikiGenes79171
SOURCE (Princeton)RBM42
Genetics Home Reference (NIH)RBM42
Genomic and cartography
GoldenPath hg38 (UCSC)RBM42  -     chr19:35629016-35637686 +  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM42  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblRBM42 - 19q13.12 [CytoView hg19]  RBM42 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIRBM42 [Mapview hg19]  RBM42 [Mapview hg38]
OMIM613232   
Gene and transcription
Genbank (Entrez)AK301669 BC002868 BC004204 BC031682 BU732481
RefSeq transcript (Entrez)NM_001319113 NM_024321
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBM42
Cluster EST : UnigeneHs.5086 [ NCBI ]
CGAP (NCI)Hs.5086
Alternative Splicing GalleryENSG00000126254
Gene ExpressionRBM42 [ NCBI-GEO ]   RBM42 [ EBI - ARRAY_EXPRESS ]   RBM42 [ SEEK ]   RBM42 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM42 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79171
GTEX Portal (Tissue expression)RBM42
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BTD8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BTD8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BTD8
Splice isoforms : SwissVarQ9BTD8
PhosPhoSitePlusQ9BTD8
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RBM42_RRM    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM42
DMDM Disease mutations79171
Blocks (Seattle)RBM42
SuperfamilyQ9BTD8
Human Protein AtlasENSG00000126254
Peptide AtlasQ9BTD8
HPRD11303
IPIIPI00021626   IPI00550442   IPI00074329   IPI00929470   
Protein Interaction databases
DIP (DOE-UCLA)Q9BTD8
IntAct (EBI)Q9BTD8
FunCoupENSG00000126254
BioGRIDRBM42
STRING (EMBL)RBM42
ZODIACRBM42
Ontologies - Pathways
QuickGOQ9BTD8
Ontology : AmiGORNA binding  protein binding  nucleus  cytoplasm  negative regulation of mRNA splicing, via spliceosome  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  cytoplasm  negative regulation of mRNA splicing, via spliceosome  
NDEx NetworkRBM42
Atlas of Cancer Signalling NetworkRBM42
Wikipedia pathwaysRBM42
Orthology - Evolution
OrthoDB79171
GeneTree (enSembl)ENSG00000126254
Phylogenetic Trees/Animal Genes : TreeFamRBM42
HOVERGENQ9BTD8
HOGENOMQ9BTD8
Homologs : HomoloGeneRBM42
Homology/Alignments : Family Browser (UCSC)RBM42
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM42
dbVarRBM42
ClinVarRBM42
1000_GenomesRBM42 
Exome Variant ServerRBM42
ExAC (Exome Aggregation Consortium)RBM42 (select the gene name)
Genetic variants : HAPMAP79171
Genomic Variants (DGV)RBM42 [DGVbeta]
DECIPHERRBM42 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM42 
Mutations
ICGC Data PortalRBM42 
TCGA Data PortalRBM42 
Broad Tumor PortalRBM42
OASIS PortalRBM42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM42  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM42
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM42
DgiDB (Drug Gene Interaction Database)RBM42
DoCM (Curated mutations)RBM42 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM42 (select a term)
intoGenRBM42
Cancer3DRBM42(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613232   
Orphanet
MedgenRBM42
Genetic Testing Registry RBM42
NextProtQ9BTD8 [Medical]
TSGene79171
GENETestsRBM42
Target ValidationRBM42
Huge Navigator RBM42 [HugePedia]
snp3D : Map Gene to Disease79171
BioCentury BCIQRBM42
ClinGenRBM42
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79171
Chemical/Pharm GKB GenePA162400760
Clinical trialRBM42
Miscellaneous
canSAR (ICR)RBM42 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM42
EVEXRBM42
GoPubMedRBM42
iHOPRBM42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:35:56 CEST 2017

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