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RBM43 (RNA binding motif protein 43)

Identity

Alias_namesC2orf38
chromosome 2 open reading frame 38
Alias_symbol (synonym)FLJ45645
Other alias
HGNC (Hugo) RBM43
LocusID (NCBI) 375287
Atlas_Id 72526
Location 2q23.3  [Link to chromosome band 2q23]
Location_base_pair Starts at 152104728 and ends at 152118389 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM43   24790
Cards
Entrez_Gene (NCBI)RBM43  375287  RNA binding motif protein 43
AliasesC2orf38
GeneCards (Weizmann)RBM43
Ensembl hg19 (Hinxton)ENSG00000184898 [Gene_View]  chr2:152104728-152118389 [Contig_View]  RBM43 [Vega]
Ensembl hg38 (Hinxton)ENSG00000184898 [Gene_View]  chr2:152104728-152118389 [Contig_View]  RBM43 [Vega]
ICGC DataPortalENSG00000184898
TCGA cBioPortalRBM43
AceView (NCBI)RBM43
Genatlas (Paris)RBM43
WikiGenes375287
SOURCE (Princeton)RBM43
Genetics Home Reference (NIH)RBM43
Genomic and cartography
GoldenPath hg19 (UCSC)RBM43  -     chr2:152104728-152118389 -  2q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBM43  -     2q23.3   [Description]    (hg38-Dec_2013)
EnsemblRBM43 - 2q23.3 [CytoView hg19]  RBM43 - 2q23.3 [CytoView hg38]
Mapping of homologs : NCBIRBM43 [Mapview hg19]  RBM43 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127552 BC136410 BC136411 BX337439 DA658209
RefSeq transcript (Entrez)NM_198557
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)RBM43
Cluster EST : UnigeneHs.302442 [ NCBI ]
CGAP (NCI)Hs.302442
Alternative Splicing GalleryENSG00000184898
Gene ExpressionRBM43 [ NCBI-GEO ]   RBM43 [ EBI - ARRAY_EXPRESS ]   RBM43 [ SEEK ]   RBM43 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM43 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375287
GTEX Portal (Tissue expression)RBM43
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZSC3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZSC3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZSC3
Splice isoforms : SwissVarQ6ZSC3
PhosPhoSitePlusQ6ZSC3
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM43
DMDM Disease mutations375287
Blocks (Seattle)RBM43
SuperfamilyQ6ZSC3
Human Protein AtlasENSG00000184898
Peptide AtlasQ6ZSC3
HPRD10992
IPIIPI00374186   IPI00915842   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZSC3
IntAct (EBI)Q6ZSC3
FunCoupENSG00000184898
BioGRIDRBM43
STRING (EMBL)RBM43
ZODIACRBM43
Ontologies - Pathways
QuickGOQ6ZSC3
Ontology : AmiGOnucleotide binding  RNA binding  
Ontology : EGO-EBInucleotide binding  RNA binding  
NDEx NetworkRBM43
Atlas of Cancer Signalling NetworkRBM43
Wikipedia pathwaysRBM43
Orthology - Evolution
OrthoDB375287
GeneTree (enSembl)ENSG00000184898
Phylogenetic Trees/Animal Genes : TreeFamRBM43
HOVERGENQ6ZSC3
HOGENOMQ6ZSC3
Homologs : HomoloGeneRBM43
Homology/Alignments : Family Browser (UCSC)RBM43
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM43 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM43
dbVarRBM43
ClinVarRBM43
1000_GenomesRBM43 
Exome Variant ServerRBM43
ExAC (Exome Aggregation Consortium)RBM43 (select the gene name)
Genetic variants : HAPMAP375287
Genomic Variants (DGV)RBM43 [DGVbeta]
DECIPHER (Syndromes)2:152104728-152118389  ENSG00000184898
CONAN: Copy Number AnalysisRBM43 
Mutations
ICGC Data PortalRBM43 
TCGA Data PortalRBM43 
Broad Tumor PortalRBM43
OASIS PortalRBM43 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM43  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM43
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM43
DgiDB (Drug Gene Interaction Database)RBM43
DoCM (Curated mutations)RBM43 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM43 (select a term)
intoGenRBM43
Cancer3DRBM43(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRBM43
Genetic Testing Registry RBM43
NextProtQ6ZSC3 [Medical]
TSGene375287
GENETestsRBM43
Huge Navigator RBM43 [HugePedia]
snp3D : Map Gene to Disease375287
BioCentury BCIQRBM43
ClinGenRBM43
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375287
Chemical/Pharm GKB GenePA162400761
Clinical trialRBM43
Miscellaneous
canSAR (ICR)RBM43 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM43
EVEXRBM43
GoPubMedRBM43
iHOPRBM43
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:41 CET 2017

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