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RBM44 (RNA binding motif protein 44)

Identity

Alias_symbol (synonym)FLJ40411
Other alias-
HGNC (Hugo) RBM44
LocusID (NCBI) 375316
Atlas_Id 72527
Location 2q37.3  [Link to chromosome band 2q37]
Location_base_pair Starts at 237798745 and ends at 237842808 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RAMP1 (2q37.3) / RBM44 (2q37.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM44   24756
Cards
Entrez_Gene (NCBI)RBM44  375316  RNA binding motif protein 44
Aliases
GeneCards (Weizmann)RBM44
Ensembl hg19 (Hinxton)ENSG00000177483 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177483 [Gene_View]  chr2:237798745-237842808 [Contig_View]  RBM44 [Vega]
ICGC DataPortalENSG00000177483
TCGA cBioPortalRBM44
AceView (NCBI)RBM44
Genatlas (Paris)RBM44
WikiGenes375316
SOURCE (Princeton)RBM44
Genetics Home Reference (NIH)RBM44
Genomic and cartography
GoldenPath hg38 (UCSC)RBM44  -     chr2:237798745-237842808 +  2q37.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM44  -     2q37.3   [Description]    (hg19-Feb_2009)
EnsemblRBM44 - 2q37.3 [CytoView hg19]  RBM44 - 2q37.3 [CytoView hg38]
Mapping of homologs : NCBIRBM44 [Mapview hg19]  RBM44 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI885906 AK097730 AK130316 BC126111 BC156419
RefSeq transcript (Entrez)NM_001080504 NM_198852
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBM44
Cluster EST : UnigeneHs.720233 [ NCBI ]
CGAP (NCI)Hs.720233
Alternative Splicing GalleryENSG00000177483
Gene ExpressionRBM44 [ NCBI-GEO ]   RBM44 [ EBI - ARRAY_EXPRESS ]   RBM44 [ SEEK ]   RBM44 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM44 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375316
GTEX Portal (Tissue expression)RBM44
Human Protein AtlasENSG00000177483-RBM44 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZP01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZP01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZP01
Splice isoforms : SwissVarQ6ZP01
PhosPhoSitePlusQ6ZP01
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RBM44_RRM    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM44
DMDM Disease mutations375316
Blocks (Seattle)RBM44
SuperfamilyQ6ZP01
Human Protein Atlas [tissue]ENSG00000177483-RBM44 [tissue]
Peptide AtlasQ6ZP01
IPIIPI00738852   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZP01
IntAct (EBI)Q6ZP01
FunCoupENSG00000177483
BioGRIDRBM44
STRING (EMBL)RBM44
ZODIACRBM44
Ontologies - Pathways
QuickGOQ6ZP01
Ontology : AmiGORNA binding  cytoplasm  protein homodimerization activity  intercellular bridge  
Ontology : EGO-EBIRNA binding  cytoplasm  protein homodimerization activity  intercellular bridge  
NDEx NetworkRBM44
Atlas of Cancer Signalling NetworkRBM44
Wikipedia pathwaysRBM44
Orthology - Evolution
OrthoDB375316
GeneTree (enSembl)ENSG00000177483
Phylogenetic Trees/Animal Genes : TreeFamRBM44
HOVERGENQ6ZP01
HOGENOMQ6ZP01
Homologs : HomoloGeneRBM44
Homology/Alignments : Family Browser (UCSC)RBM44
Gene fusions - Rearrangements
Fusion: Tumor Portal RBM44
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM44 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM44
dbVarRBM44
ClinVarRBM44
1000_GenomesRBM44 
Exome Variant ServerRBM44
ExAC (Exome Aggregation Consortium)ENSG00000177483
GNOMAD BrowserENSG00000177483
Genetic variants : HAPMAP375316
Genomic Variants (DGV)RBM44 [DGVbeta]
DECIPHERRBM44 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM44 
Mutations
ICGC Data PortalRBM44 
TCGA Data PortalRBM44 
Broad Tumor PortalRBM44
OASIS PortalRBM44 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM44  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM44
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM44
DgiDB (Drug Gene Interaction Database)RBM44
DoCM (Curated mutations)RBM44 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM44 (select a term)
intoGenRBM44
Cancer3DRBM44(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRBM44
Genetic Testing Registry RBM44
NextProtQ6ZP01 [Medical]
TSGene375316
GENETestsRBM44
Target ValidationRBM44
Huge Navigator RBM44 [HugePedia]
snp3D : Map Gene to Disease375316
BioCentury BCIQRBM44
ClinGenRBM44
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375316
Chemical/Pharm GKB GenePA162400774
Clinical trialRBM44
Miscellaneous
canSAR (ICR)RBM44 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM44
EVEXRBM44
GoPubMedRBM44
iHOPRBM44
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:24:32 CET 2017

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