Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RBM45 (RNA binding motif protein 45)

Identity

Alias_symbol (synonym)DRB1
FLJ44612
Other aliasRB-1
HGNC (Hugo) RBM45
LocusID (NCBI) 129831
Atlas_Id 72528
Location 2q31.2  [Link to chromosome band 2q31]
Location_base_pair Starts at 178112424 and ends at 178129655 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RBM45 (2q31.2) / DGUOK (2p13.1)SNTB2 (16q22.1) / RBM45 (2q31.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM45   24468
Cards
Entrez_Gene (NCBI)RBM45  129831  RNA binding motif protein 45
AliasesDRB1; RB-1
GeneCards (Weizmann)RBM45
Ensembl hg19 (Hinxton)ENSG00000155636 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155636 [Gene_View]  chr2:178112424-178129655 [Contig_View]  RBM45 [Vega]
ICGC DataPortalENSG00000155636
TCGA cBioPortalRBM45
AceView (NCBI)RBM45
Genatlas (Paris)RBM45
WikiGenes129831
SOURCE (Princeton)RBM45
Genetics Home Reference (NIH)RBM45
Genomic and cartography
GoldenPath hg38 (UCSC)RBM45  -     chr2:178112424-178129655 +  2q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM45  -     2q31.2   [Description]    (hg19-Feb_2009)
EnsemblRBM45 - 2q31.2 [CytoView hg19]  RBM45 - 2q31.2 [CytoView hg38]
Mapping of homologs : NCBIRBM45 [Mapview hg19]  RBM45 [Mapview hg38]
OMIM608888   
Gene and transcription
Genbank (Entrez)AB036991 AF526533 AK126575 BC037837 BC066549
RefSeq transcript (Entrez)NM_152945
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBM45
Cluster EST : UnigeneHs.377257 [ NCBI ]
CGAP (NCI)Hs.377257
Alternative Splicing GalleryENSG00000155636
Gene ExpressionRBM45 [ NCBI-GEO ]   RBM45 [ EBI - ARRAY_EXPRESS ]   RBM45 [ SEEK ]   RBM45 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM45 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)129831
GTEX Portal (Tissue expression)RBM45
Human Protein AtlasENSG00000155636-RBM45 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUH3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUH3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUH3
Splice isoforms : SwissVarQ8IUH3
PhosPhoSitePlusQ8IUH3
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RBM45_RRM1    RBM45_RRM2    RBM45_RRM3    RBM45_RRM4    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM45
DMDM Disease mutations129831
Blocks (Seattle)RBM45
SuperfamilyQ8IUH3
Human Protein Atlas [tissue]ENSG00000155636-RBM45 [tissue]
Peptide AtlasQ8IUH3
HPRD09927
IPIIPI00216750   IPI00552178   IPI00789303   IPI00917680   IPI00917831   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUH3
IntAct (EBI)Q8IUH3
FunCoupENSG00000155636
BioGRIDRBM45
STRING (EMBL)RBM45
ZODIACRBM45
Ontologies - Pathways
QuickGOQ8IUH3
Ontology : AmiGORNA binding  protein binding  nucleus  cytoplasm  nervous system development  cell differentiation  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  cytoplasm  nervous system development  cell differentiation  
NDEx NetworkRBM45
Atlas of Cancer Signalling NetworkRBM45
Wikipedia pathwaysRBM45
Orthology - Evolution
OrthoDB129831
GeneTree (enSembl)ENSG00000155636
Phylogenetic Trees/Animal Genes : TreeFamRBM45
HOVERGENQ8IUH3
HOGENOMQ8IUH3
Homologs : HomoloGeneRBM45
Homology/Alignments : Family Browser (UCSC)RBM45
Gene fusions - Rearrangements
Fusion: Tumor Portal RBM45
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM45 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM45
dbVarRBM45
ClinVarRBM45
1000_GenomesRBM45 
Exome Variant ServerRBM45
ExAC (Exome Aggregation Consortium)ENSG00000155636
GNOMAD BrowserENSG00000155636
Genetic variants : HAPMAP129831
Genomic Variants (DGV)RBM45 [DGVbeta]
DECIPHERRBM45 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM45 
Mutations
ICGC Data PortalRBM45 
TCGA Data PortalRBM45 
Broad Tumor PortalRBM45
OASIS PortalRBM45 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM45  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM45
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM45
DgiDB (Drug Gene Interaction Database)RBM45
DoCM (Curated mutations)RBM45 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM45 (select a term)
intoGenRBM45
Cancer3DRBM45(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608888   
Orphanet
MedgenRBM45
Genetic Testing Registry RBM45
NextProtQ8IUH3 [Medical]
TSGene129831
GENETestsRBM45
Target ValidationRBM45
Huge Navigator RBM45 [HugePedia]
snp3D : Map Gene to Disease129831
BioCentury BCIQRBM45
ClinGenRBM45
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD129831
Chemical/Pharm GKB GenePA162400809
Clinical trialRBM45
Miscellaneous
canSAR (ICR)RBM45 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM45
EVEXRBM45
GoPubMedRBM45
iHOPRBM45
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:24:32 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.