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RBM46 (RNA binding motif protein 46)

Identity

Alias_symbol (synonym)MGC27016
CT68
Other alias
HGNC (Hugo) RBM46
LocusID (NCBI) 166863
Atlas_Id 72529
Location 4q32.1  [Link to chromosome band 4q32]
Location_base_pair Starts at 154781272 and ends at 154828813 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM46   28401
Cards
Entrez_Gene (NCBI)RBM46  166863  RNA binding motif protein 46
AliasesCT68
GeneCards (Weizmann)RBM46
Ensembl hg19 (Hinxton)ENSG00000151962 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151962 [Gene_View]  chr4:154781272-154828813 [Contig_View]  RBM46 [Vega]
ICGC DataPortalENSG00000151962
TCGA cBioPortalRBM46
AceView (NCBI)RBM46
Genatlas (Paris)RBM46
WikiGenes166863
SOURCE (Princeton)RBM46
Genetics Home Reference (NIH)RBM46
Genomic and cartography
GoldenPath hg38 (UCSC)RBM46  -     chr4:154781272-154828813 +  4q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM46  -     4q32.1   [Description]    (hg19-Feb_2009)
EnsemblRBM46 - 4q32.1 [CytoView hg19]  RBM46 - 4q32.1 [CytoView hg38]
Mapping of homologs : NCBIRBM46 [Mapview hg19]  RBM46 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125877 AK302720 BC028588 DB088314 DB449155
RefSeq transcript (Entrez)NM_001277171 NM_001277173 NM_144979
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBM46
Cluster EST : UnigeneHs.745556 [ NCBI ]
CGAP (NCI)Hs.745556
Alternative Splicing GalleryENSG00000151962
Gene ExpressionRBM46 [ NCBI-GEO ]   RBM46 [ EBI - ARRAY_EXPRESS ]   RBM46 [ SEEK ]   RBM46 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM46 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)166863
GTEX Portal (Tissue expression)RBM46
Human Protein AtlasENSG00000151962-RBM46 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBY0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [axPression]  [interaction]
NextProtQ8TBY0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBY0
Splice isoforms : SwissVarQ8TBY0
PhosPhoSitePlusQ8TBY0
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)HnRNP_R/Q_splicing_fac    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM46
DMDM Disease mutations166863
Blocks (Seattle)RBM46
SuperfamilyQ8TBY0
Human Protein Atlas [tissue]ENSG00000151962-RBM46 [tissue]
Peptide AtlasQ8TBY0
HPRD14517
IPIIPI00152304   IPI00967774   IPI00967437   IPI00965528   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBY0
IntAct (EBI)Q8TBY0
FunCoupENSG00000151962
BioGRIDRBM46
STRING (EMBL)RBM46
ZODIACRBM46
Ontologies - Pathways
QuickGOQ8TBY0
Ontology : AmiGORNA binding  
Ontology : EGO-EBIRNA binding  
NDEx NetworkRBM46
Atlas of Cancer Signalling NetworkRBM46
Wikipedia pathwaysRBM46
Orthology - Evolution
OrthoDB166863
GeneTree (enSembl)ENSG00000151962
Phylogenetic Trees/Animal Genes : TreeFamRBM46
HOVERGENQ8TBY0
HOGENOMQ8TBY0
Homologs : HomoloGeneRBM46
Homology/Alignments : Family Browser (UCSC)RBM46
Gene fusions - Rearrangements
Tumor Fusion PortalRBM46
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM46 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM46
dbVarRBM46
ClinVarRBM46
1000_GenomesRBM46 
Exome Variant ServerRBM46
ExAC (Exome Aggregation Consortium)ENSG00000151962
GNOMAD BrowserENSG00000151962
Genetic variants : HAPMAP166863
Genomic Variants (DGV)RBM46 [DGVbeta]
DECIPHERRBM46 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM46 
Mutations
ICGC Data PortalRBM46 
TCGA Data PortalRBM46 
Broad Tumor PortalRBM46
OASIS PortalRBM46 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM46  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM46
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM46
DgiDB (Drug Gene Interaction Database)RBM46
DoCM (Curated mutations)RBM46 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM46 (select a term)
intoGenRBM46
Cancer3DRBM46(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRBM46
MedgenRBM46
Genetic Testing Registry RBM46
NextProtQ8TBY0 [Medical]
TSGene166863
GENETestsRBM46
Target ValidationRBM46
Huge Navigator RBM46 [HugePedia]
snp3D : Map Gene to Disease166863
BioCentury BCIQRBM46
ClinGenRBM46
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD166863
Chemical/Pharm GKB GenePA162400810
Clinical trialRBM46
Miscellaneous
canSAR (ICR)RBM46 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM46
EVEXRBM46
GoPubMedRBM46
iHOPRBM46
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:10:47 CET 2017

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