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RBM47 (RNA binding motif protein 47)

Identity

Alias_symbol (synonym)FLJ20273
NET18
Other alias
HGNC (Hugo) RBM47
LocusID (NCBI) 54502
Atlas_Id 54577
Location 4p14  [Link to chromosome band 4p14]
Location_base_pair Starts at 40423255 and ends at 40629866 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EPC1 (10p11.22) / RBM47 (4p14)PDS5A (4p14) / RBM47 (4p14)PHLDB2 (3q13.2) / RBM47 (4p14)
RBM47 (4p14) / APBB2 (4p14)RBM47 (4p14) / ATP1A1 (1p13.1)RBM47 (4p14) / CDK14 (7q21.13)
RBM47 (4p14) / EXOC1 (4q12)RBM47 (4p14) / RBM47 (4p14)PDS5A 4p14 / RBM47 4p14
RBM47 4p14 / APBB2 4p14RBM47 4p14 / EXOC1 4q12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM47   30358
Cards
Entrez_Gene (NCBI)RBM47  54502  RNA binding motif protein 47
AliasesNET18
GeneCards (Weizmann)RBM47
Ensembl hg19 (Hinxton)ENSG00000163694 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163694 [Gene_View]  chr4:40423255-40629866 [Contig_View]  RBM47 [Vega]
ICGC DataPortalENSG00000163694
TCGA cBioPortalRBM47
AceView (NCBI)RBM47
Genatlas (Paris)RBM47
WikiGenes54502
SOURCE (Princeton)RBM47
Genetics Home Reference (NIH)RBM47
Genomic and cartography
GoldenPath hg38 (UCSC)RBM47  -     chr4:40423255-40629866 -  4p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM47  -     4p14   [Description]    (hg19-Feb_2009)
EnsemblRBM47 - 4p14 [CytoView hg19]  RBM47 - 4p14 [CytoView hg38]
Mapping of homologs : NCBIRBM47 [Mapview hg19]  RBM47 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF262323 AK000280 AK024997 AK025296 AK057152
RefSeq transcript (Entrez)NM_001098634 NM_019027
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBM47
Cluster EST : UnigeneHs.518727 [ NCBI ]
CGAP (NCI)Hs.518727
Alternative Splicing GalleryENSG00000163694
Gene ExpressionRBM47 [ NCBI-GEO ]   RBM47 [ EBI - ARRAY_EXPRESS ]   RBM47 [ SEEK ]   RBM47 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54502
GTEX Portal (Tissue expression)RBM47
Human Protein AtlasENSG00000163694-RBM47 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA0AV96   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA0AV96  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA0AV96
Splice isoforms : SwissVarA0AV96
PhosPhoSitePlusA0AV96
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)HnRNP_R/Q_splicing_fac    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM47
DMDM Disease mutations54502
Blocks (Seattle)RBM47
PDB (SRS)2DIS   
PDB (PDBSum)2DIS   
PDB (IMB)2DIS   
PDB (RSDB)2DIS   
Structural Biology KnowledgeBase2DIS   
SCOP (Structural Classification of Proteins)2DIS   
CATH (Classification of proteins structures)2DIS   
SuperfamilyA0AV96
Human Protein Atlas [tissue]ENSG00000163694-RBM47 [tissue]
Peptide AtlasA0AV96
IPIIPI00169342   IPI00005042   IPI00964320   IPI00965625   IPI00964984   IPI00967035   IPI00967966   IPI00965845   IPI00968211   IPI00966779   IPI00965724   
Protein Interaction databases
DIP (DOE-UCLA)A0AV96
IntAct (EBI)A0AV96
FunCoupENSG00000163694
BioGRIDRBM47
STRING (EMBL)RBM47
ZODIACRBM47
Ontologies - Pathways
QuickGOA0AV96
Ontology : AmiGOhematopoietic progenitor cell differentiation  RNA binding  nucleus  cytidine to uridine editing  
Ontology : EGO-EBIhematopoietic progenitor cell differentiation  RNA binding  nucleus  cytidine to uridine editing  
NDEx NetworkRBM47
Atlas of Cancer Signalling NetworkRBM47
Wikipedia pathwaysRBM47
Orthology - Evolution
OrthoDB54502
GeneTree (enSembl)ENSG00000163694
Phylogenetic Trees/Animal Genes : TreeFamRBM47
HOVERGENA0AV96
HOGENOMA0AV96
Homologs : HomoloGeneRBM47
Homology/Alignments : Family Browser (UCSC)RBM47
Gene fusions - Rearrangements
Fusion: TCGA_MDACCPDS5A 4p14 RBM47 4p14 BRCA
Fusion: TCGA_MDACCRBM47 4p14 APBB2 4p14 LUAD OV
Fusion: TCGA_MDACCRBM47 4p14 EXOC1 4q12 OV
Tumor Fusion PortalRBM47
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM47
dbVarRBM47
ClinVarRBM47
1000_GenomesRBM47 
Exome Variant ServerRBM47
ExAC (Exome Aggregation Consortium)ENSG00000163694
GNOMAD BrowserENSG00000163694
Genetic variants : HAPMAP54502
Genomic Variants (DGV)RBM47 [DGVbeta]
DECIPHERRBM47 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM47 
Mutations
ICGC Data PortalRBM47 
TCGA Data PortalRBM47 
Broad Tumor PortalRBM47
OASIS PortalRBM47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM47  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM47
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM47
DgiDB (Drug Gene Interaction Database)RBM47
DoCM (Curated mutations)RBM47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM47 (select a term)
intoGenRBM47
Cancer3DRBM47(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRBM47
MedgenRBM47
Genetic Testing Registry RBM47
NextProtA0AV96 [Medical]
TSGene54502
GENETestsRBM47
Target ValidationRBM47
Huge Navigator RBM47 [HugePedia]
snp3D : Map Gene to Disease54502
BioCentury BCIQRBM47
ClinGenRBM47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54502
Chemical/Pharm GKB GenePA162400825
Clinical trialRBM47
Miscellaneous
canSAR (ICR)RBM47 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM47
EVEXRBM47
GoPubMedRBM47
iHOPRBM47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:31:56 CET 2017

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