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RBM48 (RNA binding motif protein 48)

Identity

Alias_namesC7orf64
chromosome 7 open reading frame 64
Alias_symbol (synonym)DKFZp564O0523
HSPC304
Other aliasDKFZP564O0523
HGNC (Hugo) RBM48
LocusID (NCBI) 84060
Atlas_Id 72530
Location 7q21.2  [Link to chromosome band 7q21]
Location_base_pair Starts at 92158087 and ends at 92166823 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CPM (12q15) / RBM48 (7q21.2)RBM48 (7q21.2) / DLG1 (3q29)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM48   21785
Cards
Entrez_Gene (NCBI)RBM48  84060  RNA binding motif protein 48
AliasesC7orf64; DKFZP564O0523; HSPC304
GeneCards (Weizmann)RBM48
Ensembl hg19 (Hinxton)ENSG00000127993 [Gene_View]  chr7:92158087-92166823 [Contig_View]  RBM48 [Vega]
Ensembl hg38 (Hinxton)ENSG00000127993 [Gene_View]  chr7:92158087-92166823 [Contig_View]  RBM48 [Vega]
ICGC DataPortalENSG00000127993
TCGA cBioPortalRBM48
AceView (NCBI)RBM48
Genatlas (Paris)RBM48
WikiGenes84060
SOURCE (Princeton)RBM48
Genetics Home Reference (NIH)RBM48
Genomic and cartography
GoldenPath hg19 (UCSC)RBM48  -     chr7:92158087-92166823 +  7q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBM48  -     7q21.2   [Description]    (hg38-Dec_2013)
EnsemblRBM48 - 7q21.2 [CytoView hg19]  RBM48 - 7q21.2 [CytoView hg38]
Mapping of homologs : NCBIRBM48 [Mapview hg19]  RBM48 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF161422 AK054777 AK294626 AK294812 AL136619
RefSeq transcript (Entrez)NM_032120
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)RBM48
Cluster EST : UnigeneHs.21590 [ NCBI ]
CGAP (NCI)Hs.21590
Alternative Splicing GalleryENSG00000127993
Gene ExpressionRBM48 [ NCBI-GEO ]   RBM48 [ EBI - ARRAY_EXPRESS ]   RBM48 [ SEEK ]   RBM48 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM48 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84060
GTEX Portal (Tissue expression)RBM48
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5RL73   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5RL73  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5RL73
Splice isoforms : SwissVarQ5RL73
PhosPhoSitePlusQ5RL73
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RBM48
DMDM Disease mutations84060
Blocks (Seattle)RBM48
SuperfamilyQ5RL73
Human Protein AtlasENSG00000127993
Peptide AtlasQ5RL73
HPRD13173
IPIIPI00549763   IPI00908362   IPI00978258   IPI00103659   IPI00937338   
Protein Interaction databases
DIP (DOE-UCLA)Q5RL73
IntAct (EBI)Q5RL73
FunCoupENSG00000127993
BioGRIDRBM48
STRING (EMBL)RBM48
ZODIACRBM48
Ontologies - Pathways
QuickGOQ5RL73
Ontology : AmiGORNA binding  nucleoplasm  
Ontology : EGO-EBIRNA binding  nucleoplasm  
NDEx NetworkRBM48
Atlas of Cancer Signalling NetworkRBM48
Wikipedia pathwaysRBM48
Orthology - Evolution
OrthoDB84060
GeneTree (enSembl)ENSG00000127993
Phylogenetic Trees/Animal Genes : TreeFamRBM48
HOVERGENQ5RL73
HOGENOMQ5RL73
Homologs : HomoloGeneRBM48
Homology/Alignments : Family Browser (UCSC)RBM48
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM48 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM48
dbVarRBM48
ClinVarRBM48
1000_GenomesRBM48 
Exome Variant ServerRBM48
ExAC (Exome Aggregation Consortium)RBM48 (select the gene name)
Genetic variants : HAPMAP84060
Genomic Variants (DGV)RBM48 [DGVbeta]
DECIPHER (Syndromes)7:92158087-92166823  ENSG00000127993
CONAN: Copy Number AnalysisRBM48 
Mutations
ICGC Data PortalRBM48 
TCGA Data PortalRBM48 
Broad Tumor PortalRBM48
OASIS PortalRBM48 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRBM48
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM48
DgiDB (Drug Gene Interaction Database)RBM48
DoCM (Curated mutations)RBM48 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM48 (select a term)
intoGenRBM48
Cancer3DRBM48(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRBM48
Genetic Testing Registry RBM48
NextProtQ5RL73 [Medical]
TSGene84060
GENETestsRBM48
Huge Navigator RBM48 [HugePedia]
snp3D : Map Gene to Disease84060
BioCentury BCIQRBM48
ClinGenRBM48
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84060
Chemical/Pharm GKB GenePA164717383
Clinical trialRBM48
Miscellaneous
canSAR (ICR)RBM48 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM48
EVEXRBM48
GoPubMedRBM48
iHOPRBM48
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:42 CET 2017

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