Atlas of Genetics and Cytogenetics in Oncology and Haematology

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RBM4B (RNA binding motif protein 4B)

Identity

Alias_namesRBM30
RNA binding motif protein 30
Alias_symbol (synonym)MGC10871
ZCCHC15
RBM4L
ZCRB3B
ZCCHC21B
Other alias
HGNC (Hugo) RBM4B
LocusID (NCBI) 83759
Atlas_Id 72531
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 66664994 and ends at 66677921 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHST15 (10q26.13) / RBM4B (11q13.2)RBM14 (11q13.2) / RBM4B (11q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RBM4B   28842
Cards
Entrez_Gene (NCBI)RBM4B  83759  RNA binding motif protein 4B
AliasesRBM30; RBM4L; ZCCHC15; ZCCHC21B; 
ZCRB3B
GeneCards (Weizmann)RBM4B
Ensembl hg19 (Hinxton)ENSG00000173914 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173914 [Gene_View]  ENSG00000173914 [Sequence]  chr11:66664994-66677921 [Contig_View]  RBM4B [Vega]
ICGC DataPortalENSG00000173914
TCGA cBioPortalRBM4B
AceView (NCBI)RBM4B
Genatlas (Paris)RBM4B
WikiGenes83759
SOURCE (Princeton)RBM4B
Genetics Home Reference (NIH)RBM4B
Genomic and cartography
GoldenPath hg38 (UCSC)RBM4B  -     chr11:66664994-66677921 -  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM4B  -     11q13.2   [Description]    (hg19-Feb_2009)
GoldenPathRBM4B - 11q13.2 [CytoView hg19]  RBM4B - 11q13.2 [CytoView hg38]
ImmunoBaseENSG00000173914
Mapping of homologs : NCBIRBM4B [Mapview hg19]  RBM4B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095158 AL050172 BC003503 BC004951 BQ428264
RefSeq transcript (Entrez)NM_001286135 NM_031492
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBM4B
Cluster EST : UnigeneHs.618713 [ NCBI ]
CGAP (NCI)Hs.618713
Alternative Splicing GalleryENSG00000173914
Gene ExpressionRBM4B [ NCBI-GEO ]   RBM4B [ EBI - ARRAY_EXPRESS ]   RBM4B [ SEEK ]   RBM4B [ MEM ]
Gene Expression Viewer (FireBrowse)RBM4B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83759
GTEX Portal (Tissue expression)RBM4B
Human Protein AtlasENSG00000173914-RBM4B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQ04   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQ04  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQ04
Splice isoforms : SwissVarQ9BQ04
PhosPhoSitePlusQ9BQ04
Domaine pattern : Prosite (Expaxy)RRM (PS50102)    ZF_CCHC (PS50158)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RBM4_RRM1    RBM4_RRM2    RRM_dom    Znf_CCHC   
Domain families : Pfam (Sanger)RRM_1 (PF00076)    zf-CCHC (PF00098)   
Domain families : Pfam (NCBI)pfam00076    pfam00098   
Domain families : Smart (EMBL)RRM (SM00360)  ZnF_C2HC (SM00343)  
Conserved Domain (NCBI)RBM4B
DMDM Disease mutations83759
Blocks (Seattle)RBM4B
PDB (RSDB)2DGT   
PDB Europe2DGT   
PDB (PDBSum)2DGT   
PDB (IMB)2DGT   
Structural Biology KnowledgeBase2DGT   
SCOP (Structural Classification of Proteins)2DGT   
CATH (Classification of proteins structures)2DGT   
SuperfamilyQ9BQ04
Human Protein Atlas [tissue]ENSG00000173914-RBM4B [tissue]
Peptide AtlasQ9BQ04
HPRD15230
IPIIPI00027838   IPI00979194   IPI00978512   IPI00977800   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQ04
IntAct (EBI)Q9BQ04
FunCoupENSG00000173914
BioGRIDRBM4B
STRING (EMBL)RBM4B
ZODIACRBM4B
Ontologies - Pathways
QuickGOQ9BQ04
Ontology : AmiGOregulation of alternative mRNA splicing, via spliceosome  RNA binding  RNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cytosol  regulation of translation  circadian rhythm  zinc ion binding  positive regulation of gene expression  nuclear speck  circadian regulation of gene expression  protein-containing complex  entrainment of circadian clock by photoperiod  mRNA cis splicing, via spliceosome  
Ontology : EGO-EBIregulation of alternative mRNA splicing, via spliceosome  RNA binding  RNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cytosol  regulation of translation  circadian rhythm  zinc ion binding  positive regulation of gene expression  nuclear speck  circadian regulation of gene expression  protein-containing complex  entrainment of circadian clock by photoperiod  mRNA cis splicing, via spliceosome  
NDEx NetworkRBM4B
Atlas of Cancer Signalling NetworkRBM4B
Wikipedia pathwaysRBM4B
Orthology - Evolution
OrthoDB83759
GeneTree (enSembl)ENSG00000173914
Phylogenetic Trees/Animal Genes : TreeFamRBM4B
HOGENOMQ9BQ04
Homologs : HomoloGeneRBM4B
Homology/Alignments : Family Browser (UCSC)RBM4B
Gene fusions - Rearrangements
Fusion : QuiverRBM4B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM4B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM4B
dbVarRBM4B
ClinVarRBM4B
1000_GenomesRBM4B 
Exome Variant ServerRBM4B
ExAC (Exome Aggregation Consortium)ENSG00000173914
GNOMAD BrowserENSG00000173914
Varsome BrowserRBM4B
Genetic variants : HAPMAP83759
Genomic Variants (DGV)RBM4B [DGVbeta]
DECIPHERRBM4B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM4B 
Mutations
ICGC Data PortalRBM4B 
TCGA Data PortalRBM4B 
Broad Tumor PortalRBM4B
OASIS PortalRBM4B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM4B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRBM4B
Mutations and Diseases : HGMDRBM4B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM4B
DgiDB (Drug Gene Interaction Database)RBM4B
DoCM (Curated mutations)RBM4B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM4B (select a term)
intoGenRBM4B
Cancer3DRBM4B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRBM4B
MedgenRBM4B
Genetic Testing Registry RBM4B
NextProtQ9BQ04 [Medical]
TSGene83759
GENETestsRBM4B
Target ValidationRBM4B
Huge Navigator RBM4B [HugePedia]
snp3D : Map Gene to Disease83759
BioCentury BCIQRBM4B
ClinGenRBM4B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83759
Chemical/Pharm GKB GenePA134977404
Clinical trialRBM4B
Miscellaneous
canSAR (ICR)RBM4B (select the gene name)
DataMed IndexRBM4B
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM4B
EVEXRBM4B
GoPubMedRBM4B
iHOPRBM4B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:02:54 CEST 2019
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