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RBM7 (RNA binding motif protein 7)

Identity

Other alias-
HGNC (Hugo) RBM7
LocusID (NCBI) 10179
Atlas_Id 72533
Location 11q23.2  [Link to chromosome band 11q23]
Location_base_pair Starts at 114400529 and ends at 114410610 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM7   9904
Cards
Entrez_Gene (NCBI)RBM7  10179  RNA binding motif protein 7
Aliases
GeneCards (Weizmann)RBM7
Ensembl hg19 (Hinxton)ENSG00000076053 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000076053 [Gene_View]  chr11:114400529-114410610 [Contig_View]  RBM7 [Vega]
ICGC DataPortalENSG00000076053
TCGA cBioPortalRBM7
AceView (NCBI)RBM7
Genatlas (Paris)RBM7
WikiGenes10179
SOURCE (Princeton)RBM7
Genetics Home Reference (NIH)RBM7
Genomic and cartography
GoldenPath hg38 (UCSC)RBM7  -     chr11:114400529-114410610 +  11q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM7  -     11q23.2   [Description]    (hg19-Feb_2009)
EnsemblRBM7 - 11q23.2 [CytoView hg19]  RBM7 - 11q23.2 [CytoView hg38]
Mapping of homologs : NCBIRBM7 [Mapview hg19]  RBM7 [Mapview hg38]
OMIM612413   
Gene and transcription
Genbank (Entrez)AB209753 AF156098 AK002015 AK225615 AK225667
RefSeq transcript (Entrez)NM_001286045 NM_001286046 NM_001286047 NM_001286048 NM_016090
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBM7
Cluster EST : UnigeneHs.7527 [ NCBI ]
CGAP (NCI)Hs.7527
Alternative Splicing GalleryENSG00000076053
Gene ExpressionRBM7 [ NCBI-GEO ]   RBM7 [ EBI - ARRAY_EXPRESS ]   RBM7 [ SEEK ]   RBM7 [ MEM ]
Gene Expression Viewer (FireBrowse)RBM7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10179
GTEX Portal (Tissue expression)RBM7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y580   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y580  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y580
Splice isoforms : SwissVarQ9Y580
PhosPhoSitePlusQ9Y580
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM7
DMDM Disease mutations10179
Blocks (Seattle)RBM7
PDB (SRS)2M8H    5IQQ    5LXR    5LXY   
PDB (PDBSum)2M8H    5IQQ    5LXR    5LXY   
PDB (IMB)2M8H    5IQQ    5LXR    5LXY   
PDB (RSDB)2M8H    5IQQ    5LXR    5LXY   
Structural Biology KnowledgeBase2M8H    5IQQ    5LXR    5LXY   
SCOP (Structural Classification of Proteins)2M8H    5IQQ    5LXR    5LXY   
CATH (Classification of proteins structures)2M8H    5IQQ    5LXR    5LXY   
SuperfamilyQ9Y580
Human Protein AtlasENSG00000076053
Peptide AtlasQ9Y580
HPRD11488
IPIIPI00001134   IPI01014295   IPI00556348   IPI01011626   IPI01013862   IPI01012450   IPI01011168   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y580
IntAct (EBI)Q9Y580
FunCoupENSG00000076053
BioGRIDRBM7
STRING (EMBL)RBM7
ZODIACRBM7
Ontologies - Pathways
QuickGOQ9Y580
Ontology : AmiGOregulation of alternative mRNA splicing, via spliceosome  RNA binding  single-stranded RNA binding  protein binding  nucleus  nucleoplasm  meiotic cell cycle  
Ontology : EGO-EBIregulation of alternative mRNA splicing, via spliceosome  RNA binding  single-stranded RNA binding  protein binding  nucleus  nucleoplasm  meiotic cell cycle  
NDEx NetworkRBM7
Atlas of Cancer Signalling NetworkRBM7
Wikipedia pathwaysRBM7
Orthology - Evolution
OrthoDB10179
GeneTree (enSembl)ENSG00000076053
Phylogenetic Trees/Animal Genes : TreeFamRBM7
HOVERGENQ9Y580
HOGENOMQ9Y580
Homologs : HomoloGeneRBM7
Homology/Alignments : Family Browser (UCSC)RBM7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM7
dbVarRBM7
ClinVarRBM7
1000_GenomesRBM7 
Exome Variant ServerRBM7
ExAC (Exome Aggregation Consortium)RBM7 (select the gene name)
Genetic variants : HAPMAP10179
Genomic Variants (DGV)RBM7 [DGVbeta]
DECIPHERRBM7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM7 
Mutations
ICGC Data PortalRBM7 
TCGA Data PortalRBM7 
Broad Tumor PortalRBM7
OASIS PortalRBM7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBM7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBM7
DgiDB (Drug Gene Interaction Database)RBM7
DoCM (Curated mutations)RBM7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM7 (select a term)
intoGenRBM7
Cancer3DRBM7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612413   
Orphanet
MedgenRBM7
Genetic Testing Registry RBM7
NextProtQ9Y580 [Medical]
TSGene10179
GENETestsRBM7
Target ValidationRBM7
Huge Navigator RBM7 [HugePedia]
snp3D : Map Gene to Disease10179
BioCentury BCIQRBM7
ClinGenRBM7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10179
Chemical/Pharm GKB GenePA34269
Clinical trialRBM7
Miscellaneous
canSAR (ICR)RBM7 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM7
EVEXRBM7
GoPubMedRBM7
iHOPRBM7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:21 CEST 2017

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