Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RBM8A (RNA binding motif protein 8A)

Identity

Other namesBOV-1A
BOV-1B
BOV-1C
C1DELq21.1
DEL1q21.1
MDS014
RBM8
RBM8B
TAR
Y14
ZNRP
ZRNP1
HGNC (Hugo) RBM8A
LocusID (NCBI) 9939
Atlas_Id 42071
Location 1q21.1
Location_base_pair Starts at 145507557 and ends at 145513535 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
FRMPD3 (Xq22.3) / RBM8A (1q21.1)ITSN2 (2p23.3) / RBM8A (1q21.1)RBM8A (1q21.1) / DYNLRB1 (20q11.22)
RBM8A (1q21.1) / SOS1 (2p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBM8A   9905
Cards
Entrez_Gene (NCBI)RBM8A  9939  RNA binding motif protein 8A
GeneCards (Weizmann)RBM8A
Ensembl hg19 (Hinxton)ENSG00000265241 [Gene_View]  chr1:145507557-145513535 [Contig_View]  RBM8A [Vega]
Ensembl hg38 (Hinxton)ENSG00000265241 [Gene_View]  chr1:145507557-145513535 [Contig_View]  RBM8A [Vega]
ICGC DataPortalENSG00000265241
TCGA cBioPortalRBM8A
AceView (NCBI)RBM8A
Genatlas (Paris)RBM8A
WikiGenes9939
SOURCE (Princeton)RBM8A
Genomic and cartography
GoldenPath hg19 (UCSC)RBM8A  -     chr1:145507557-145513535 +  1q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBM8A  -     1q21.1   [Description]    (hg38-Dec_2013)
EnsemblRBM8A - 1q21.1 [CytoView hg19]  RBM8A - 1q21.1 [CytoView hg38]
Mapping of homologs : NCBIRBM8A [Mapview hg19]  RBM8A [Mapview hg38]
OMIM274000   605313   
Gene and transcription
Genbank (Entrez)AF127761 AF161463 AF182415 AF198620 AF231511
RefSeq transcript (Entrez)NM_005105
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_032654 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)RBM8A
Cluster EST : UnigeneHs.591455 [ NCBI ]
CGAP (NCI)Hs.591455
Alternative Splicing : Fast-db (Paris)GSHG0000895
Alternative Splicing GalleryENSG00000265241
Gene ExpressionRBM8A [ NCBI-GEO ]   RBM8A [ EBI - ARRAY_EXPRESS ]   RBM8A [ SEEK ]   RBM8A [ MEM ]
Gene Expression Viewer (FireBrowse)RBM8A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)9939
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5S9 (Uniprot)
NextProtQ9Y5S9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5S9
Splice isoforms : SwissVarQ9Y5S9 (Swissvar)
PhosPhoSitePlusQ9Y5S9
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RNA-bd_8    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
DMDM Disease mutations9939
Blocks (Seattle)RBM8A
PDB (SRS)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7   
PDB (PDBSum)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7   
PDB (IMB)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7   
PDB (RSDB)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7   
Structural Biology KnowledgeBase1P27    2HYI    2J0Q    2J0S    2XB2    3EX7   
SCOP (Structural Classification of Proteins)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7   
CATH (Classification of proteins structures)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7   
SuperfamilyQ9Y5S9
Human Protein AtlasENSG00000265241
Peptide AtlasQ9Y5S9
HPRD05609
IPIIPI00001757   IPI00216659   IPI00383083   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5S9
IntAct (EBI)Q9Y5S9
FunCoupENSG00000265241
BioGRIDRBM8A
STRING (EMBL)RBM8A
ZODIACRBM8A
Ontologies - Pathways
QuickGOQ9Y5S9
Ontology : AmiGOnucleotide binding  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  regulation of alternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  mRNA binding  mRNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  cytosol  termination of RNA polymerase II transcription  RNA export from nucleus  mRNA export from nucleus  regulation of translation  nuclear speck  dendrite  mRNA 3'-end processing  exon-exon junction complex  neuronal cell body  poly(A) RNA binding  catalytic step 2 spliceosome  
Ontology : EGO-EBInucleotide binding  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  regulation of alternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  mRNA binding  mRNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  cytosol  termination of RNA polymerase II transcription  RNA export from nucleus  mRNA export from nucleus  regulation of translation  nuclear speck  dendrite  mRNA 3'-end processing  exon-exon junction complex  neuronal cell body  poly(A) RNA binding  catalytic step 2 spliceosome  
Pathways : KEGGRNA transport    mRNA surveillance pathway    Spliceosome   
NDEx Network
Atlas of Cancer Signalling NetworkRBM8A
Wikipedia pathwaysRBM8A
Orthology - Evolution
OrthoDB9939
GeneTree (enSembl)ENSG00000265241
Phylogenetic Trees/Animal Genes : TreeFamRBM8A
Homologs : HomoloGeneRBM8A
Homology/Alignments : Family Browser (UCSC)RBM8A
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerRBM8A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM8A
dbVarRBM8A
ClinVarRBM8A
1000_GenomesRBM8A 
Exome Variant ServerRBM8A
ExAC (Exome Aggregation Consortium)RBM8A (select the gene name)
SNP (GeneSNP Utah)RBM8A
SNP : HGBaseRBM8A
Genetic variants : HAPMAPRBM8A
Genomic Variants (DGV)RBM8A [DGVbeta]
Mutations
ICGC Data PortalRBM8A 
TCGA Data PortalRBM8A 
Broad Tumor PortalRBM8A
OASIS PortalRBM8A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM8A 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
BioMutasearch RBM8A
DgiDB (Drug Gene Interaction Database)RBM8A
DoCM (Curated mutations)RBM8A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBM8A (select a term)
intoGenRBM8A
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:145507557-145513535
CONAN: Copy Number AnalysisRBM8A 
Mutations and Diseases : HGMDRBM8A
OMIM274000    605313   
MedgenRBM8A
Genetic Testing Registry RBM8A
NextProtQ9Y5S9 [Medical]
TSGene9939
GENETestsRBM8A
Huge Navigator RBM8A [HugePedia]  RBM8A [HugeCancerGEM]
snp3D : Map Gene to Disease9939
BioCentury BCIQRBM8A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9939
Chemical/Pharm GKB GenePA34270
Clinical trialRBM8A
Miscellaneous
canSAR (ICR)RBM8A (select the gene name)
Probes
Litterature
PubMed87 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBM8A
GoPubMedRBM8A
iHOPRBM8A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sat Apr 16 18:01:49 CEST 2016

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