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RBM8A (RNA binding motif protein 8A)

Identity

Other namesBOV-1A
BOV-1B
BOV-1C
C1DELq21.1
DEL1q21.1
MDS014
RBM8
RBM8B
TAR
Y14
ZNRP
ZRNP1
HGNC (Hugo) RBM8A
LocusID (NCBI) 9939
Location 1q21.1
Location_base_pair Starts at 145507557 and ends at 145513535 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RBM8A   9905
Cards
Entrez_Gene (NCBI)RBM8A  9939  RNA binding motif protein 8A
GeneCards (Weizmann)RBM8A
Ensembl (Hinxton)ENSG00000131795 [Gene_View]  chr1:145507557-145513535 [Contig_View]  RBM8A [Vega]
ICGC DataPortalENSG00000131795
AceView (NCBI)RBM8A
Genatlas (Paris)RBM8A
WikiGenes9939
SOURCE (Princeton)NM_005105
Genomic and cartography
GoldenPath (UCSC)RBM8A  -  1q21.1   chr1:145507557-145513535 +  1q21.1   [Description]    (hg19-Feb_2009)
EnsemblRBM8A - 1q21.1 [CytoView]
Mapping of homologs : NCBIRBM8A [Mapview]
OMIM274000   605313   
Gene and transcription
Genbank (Entrez)AF127761 AF161463 AF182415 AF198620 AF231511
RefSeq transcript (Entrez)NM_005105
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_032654 NT_004487 NW_001838504 NW_004929293
Consensus coding sequences : CCDS (NCBI)RBM8A
Cluster EST : UnigeneHs.591455 [ NCBI ]
CGAP (NCI)Hs.591455
Alternative Splicing : Fast-db (Paris)GSHG0000895
Alternative Splicing GalleryENSG00000131795
Gene ExpressionRBM8A [ NCBI-GEO ]     RBM8A [ SEEK ]   RBM8A [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5S9 (Uniprot)
NextProtQ9Y5S9  [Medical]
With graphics : InterProQ9Y5S9
Splice isoforms : SwissVarQ9Y5S9 (Swissvar)
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RNA-bd_8    RRM_dom   
Related proteins : CluSTrQ9Y5S9
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
DMDM Disease mutations9939
Blocks (Seattle)Q9Y5S9
PDB (SRS)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7   
PDB (PDBSum)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7   
PDB (IMB)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7   
PDB (RSDB)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7   
Human Protein AtlasENSG00000131795
Peptide AtlasQ9Y5S9
HPRD05609
IPIIPI00001757   IPI00216659   IPI00383083   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5S9
IntAct (EBI)Q9Y5S9
FunCoupENSG00000131795
BioGRIDRBM8A
InParanoidQ9Y5S9
Interologous Interaction database Q9Y5S9
IntegromeDBRBM8A
STRING (EMBL)RBM8A
Ontologies - Pathways
Ontology : AmiGOnucleotide binding  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  regulation of alternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  mRNA binding  protein binding  nucleus  nucleus  nucleoplasm  nucleolus  cytoplasm  cytosol  transcription from RNA polymerase II promoter  termination of RNA polymerase II transcription  mRNA export from nucleus  regulation of translation  RNA splicing  gene expression  RNA metabolic process  mRNA metabolic process  nuclear speck  mRNA 3'-end processing  exon-exon junction complex  poly(A) RNA binding  catalytic step 2 spliceosome  
Ontology : EGO-EBInucleotide binding  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  regulation of alternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  mRNA binding  protein binding  nucleus  nucleus  nucleoplasm  nucleolus  cytoplasm  cytosol  transcription from RNA polymerase II promoter  termination of RNA polymerase II transcription  mRNA export from nucleus  regulation of translation  RNA splicing  gene expression  RNA metabolic process  mRNA metabolic process  nuclear speck  mRNA 3'-end processing  exon-exon junction complex  poly(A) RNA binding  catalytic step 2 spliceosome  
Pathways : KEGGRNA transport    mRNA surveillance pathway    Spliceosome   
Protein Interaction DatabaseRBM8A
Wikipedia pathwaysRBM8A
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RBM8A
SNP (GeneSNP Utah)RBM8A
SNP : HGBaseRBM8A
Genetic variants : HAPMAPRBM8A
1000_GenomesRBM8A 
ICGC programENSG00000131795 
CONAN: Copy Number AnalysisRBM8A 
Somatic Mutations in Cancer : COSMICRBM8A 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
Mutations and Diseases : HGMDRBM8A
OMIM274000    605313   
MedgenRBM8A
GENETestsRBM8A
Disease Genetic AssociationRBM8A
Huge Navigator RBM8A [HugePedia]  RBM8A [HugeCancerGEM]
Genomic VariantsRBM8A  RBM8A [DGVbeta]
Exome VariantRBM8A
dbVarRBM8A
ClinVarRBM8A
snp3D : Map Gene to Disease9939
General knowledge
Homologs : HomoloGeneRBM8A
Homology/Alignments : Family Browser (UCSC)RBM8A
Phylogenetic Trees/Animal Genes : TreeFamRBM8A
Chemical/Protein Interactions : CTD9939
Chemical/Pharm GKB GenePA34270
Clinical trialRBM8A
Cancer Resource (Charite)ENSG00000131795
Other databases
Probes
Litterature
PubMed74 Pubmed reference(s) in Entrez
CoreMineRBM8A
iHOPRBM8A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 13:12:45 CEST 2014

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