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RBM8A (RNA binding motif protein 8A)

Identity

Alias (NCBI)BOV-1A
BOV-1B
BOV-1C
C1DELq21.1
DEL1q21.1
MDS014
RBM8
RBM8B
TAR
Y14
ZNRP
ZRNP1
HGNC (Hugo) RBM8A
HGNC Alias symbZNRP
BOV-1A
BOV-1B
BOV-1C
RBM8B
Y14
HGNC Alias namebinder of OVCA1
HGNC Previous nameRBM8
LocusID (NCBI) 9939
Atlas_Id 42071
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 145921557 and ends at 145927484 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FRMPD3 (Xq22.3) / RBM8A (1q21.1)ITSN2 (2p23.3) / RBM8A (1q21.1)RBM8A (1q21.1) / DYNLRB1 (20q11.22)
RBM8A (1q21.1) / SOS1 (2p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RBM8A   9905
LRG (Locus Reference Genomic)LRG_574
Cards
Entrez_Gene (NCBI)RBM8A    RNA binding motif protein 8A
AliasesBOV-1A; BOV-1B; BOV-1C; C1DELq21.1; 
DEL1q21.1; MDS014; RBM8; RBM8B; TAR; Y14; ZNRP; ZRNP1
GeneCards (Weizmann)RBM8A
Ensembl hg19 (Hinxton)ENSG00000265241 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000265241 [Gene_View]  ENSG00000265241 [Sequence]  chr1:145921557-145927484 [Contig_View]  RBM8A [Vega]
ICGC DataPortalENSG00000265241
TCGA cBioPortalRBM8A
AceView (NCBI)RBM8A
Genatlas (Paris)RBM8A
SOURCE (Princeton)RBM8A
Genetics Home Reference (NIH)RBM8A
Genomic and cartography
GoldenPath hg38 (UCSC)RBM8A  -     chr1:145921557-145927484 -  1q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBM8A  -     1q21.1   [Description]    (hg19-Feb_2009)
GoldenPathRBM8A - 1q21.1 [CytoView hg19]  RBM8A - 1q21.1 [CytoView hg38]
ImmunoBaseENSG00000265241
Genome Data Viewer NCBIRBM8A [Mapview hg19]  
OMIM274000   605313   
Gene and transcription
Genbank (Entrez)AF127761 AF161463 AF182415 AF198620 AF231511
RefSeq transcript (Entrez)NM_005105
Consensus coding sequences : CCDS (NCBI)RBM8A
Gene ExpressionRBM8A [ NCBI-GEO ]   RBM8A [ EBI - ARRAY_EXPRESS ]   RBM8A [ SEEK ]   RBM8A [ MEM ]
Gene Expression Viewer (FireBrowse)RBM8A [ Firebrowse - Broad ]
GenevisibleExpression of RBM8A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9939
GTEX Portal (Tissue expression)RBM8A
Human Protein AtlasENSG00000265241-RBM8A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5S9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5S9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5S9
PhosPhoSitePlusQ9Y5S9
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RNA-bd_8    RRM_dom    RRM_RBM8   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBM8A
PDB (RSDB)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7    5XJC    5YZG    6ICZ    6QDV    7A5P   
PDB Europe1P27    2HYI    2J0Q    2J0S    2XB2    3EX7    5XJC    5YZG    6ICZ    6QDV    7A5P   
PDB (PDBSum)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7    5XJC    5YZG    6ICZ    6QDV    7A5P   
PDB (IMB)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7    5XJC    5YZG    6ICZ    6QDV    7A5P   
Structural Biology KnowledgeBase1P27    2HYI    2J0Q    2J0S    2XB2    3EX7    5XJC    5YZG    6ICZ    6QDV    7A5P   
SCOP (Structural Classification of Proteins)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7    5XJC    5YZG    6ICZ    6QDV    7A5P   
CATH (Classification of proteins structures)1P27    2HYI    2J0Q    2J0S    2XB2    3EX7    5XJC    5YZG    6ICZ    6QDV    7A5P   
SuperfamilyQ9Y5S9
AlphaFold pdb e-kbQ9Y5S9   
Human Protein Atlas [tissue]ENSG00000265241-RBM8A [tissue]
HPRD05609
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5S9
IntAct (EBI)Q9Y5S9
BioGRIDRBM8A
STRING (EMBL)RBM8A
ZODIACRBM8A
Ontologies - Pathways
QuickGOQ9Y5S9
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  regulation of alternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  RNA binding  mRNA binding  mRNA binding  protein binding  nucleus  nucleus  nucleoplasm  cytoplasm  cytosol  RNA export from nucleus  mRNA export from nucleus  regulation of translation  RNA splicing  nuclear speck  dendrite  mRNA 3'-end processing  exon-exon junction complex  exon-exon junction complex  neuronal cell body  U2-type catalytic step 1 spliceosome  catalytic step 2 spliceosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  regulation of alternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  RNA binding  mRNA binding  mRNA binding  protein binding  nucleus  nucleus  nucleoplasm  cytoplasm  cytosol  RNA export from nucleus  mRNA export from nucleus  regulation of translation  RNA splicing  nuclear speck  dendrite  mRNA 3'-end processing  exon-exon junction complex  exon-exon junction complex  neuronal cell body  U2-type catalytic step 1 spliceosome  catalytic step 2 spliceosome  
Pathways : KEGGRNA transport    mRNA surveillance pathway    Spliceosome   
NDEx NetworkRBM8A
Atlas of Cancer Signalling NetworkRBM8A
Wikipedia pathwaysRBM8A
Orthology - Evolution
OrthoDB9939
GeneTree (enSembl)ENSG00000265241
Phylogenetic Trees/Animal Genes : TreeFamRBM8A
Homologs : HomoloGeneRBM8A
Homology/Alignments : Family Browser (UCSC)RBM8A
Gene fusions - Rearrangements
Fusion : QuiverRBM8A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBM8A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBM8A
dbVarRBM8A
ClinVarRBM8A
MonarchRBM8A
1000_GenomesRBM8A 
Exome Variant ServerRBM8A
GNOMAD BrowserENSG00000265241
Varsome BrowserRBM8A
ACMGRBM8A variants
VarityQ9Y5S9
Genomic Variants (DGV)RBM8A [DGVbeta]
DECIPHERRBM8A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBM8A 
Mutations
ICGC Data PortalRBM8A 
TCGA Data PortalRBM8A 
Broad Tumor PortalRBM8A
OASIS PortalRBM8A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBM8A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRBM8A
Mutations and Diseases : HGMDRBM8A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRBM8A
DgiDB (Drug Gene Interaction Database)RBM8A
DoCM (Curated mutations)RBM8A
CIViC (Clinical Interpretations of Variants in Cancer)RBM8A
Cancer3DRBM8A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM274000    605313   
Orphanet595   
DisGeNETRBM8A
MedgenRBM8A
Genetic Testing Registry RBM8A
NextProtQ9Y5S9 [Medical]
GENETestsRBM8A
Target ValidationRBM8A
Huge Navigator RBM8A [HugePedia]
ClinGenRBM8A
Clinical trials, drugs, therapy
MyCancerGenomeRBM8A
Protein Interactions : CTDRBM8A
Pharm GKB GenePA34270
PharosQ9Y5S9
Clinical trialRBM8A
Miscellaneous
canSAR (ICR)RBM8A
HarmonizomeRBM8A
DataMed IndexRBM8A
Probes
Litterature
PubMed134 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRBM8A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:28:29 CEST 2021

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