Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RBMS1 (RNA binding motif single stranded interacting protein 1)

Identity

Alias_namesC2orf12
chromosome 2 open reading frame 12
Alias_symbol (synonym)SCR2
MSSP-1
MSSP-2
MSSP-3
YC1
HCC-4
DKFZp564H0764
Other aliasMSSP
HGNC (Hugo) RBMS1
LocusID (NCBI) 5937
Atlas_Id 54019
Location 2q24.2  [Link to chromosome band 2q24]
Location_base_pair Starts at 160272151 and ends at 160493807 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
APC (5q22.2) / RBMS1 (2q24.2)ARID3B (15q24.1) / RBMS1 (2q24.2)ITGB6 (2q24.2) / RBMS1 (2q24.2)
PHF12 (17q11.2) / RBMS1 (2q24.2)PLA2R1 (2q24.2) / RBMS1 (2q24.2)RBMS1 (2q24.2) / APC (5q22.2)
RBMS1 (2q24.2) / ZNF664-FAM101A (12q24.31)PLA2R1 RBMS1ITGB6 2q24.2 / RBMS1 2q24.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBMS1   9907
Cards
Entrez_Gene (NCBI)RBMS1  5937  RNA binding motif single stranded interacting protein 1
AliasesC2orf12; HCC-4; MSSP; MSSP-1; 
MSSP-2; MSSP-3; SCR2; YC1
GeneCards (Weizmann)RBMS1
Ensembl hg19 (Hinxton)ENSG00000153250 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153250 [Gene_View]  chr2:160272151-160493807 [Contig_View]  RBMS1 [Vega]
ICGC DataPortalENSG00000153250
TCGA cBioPortalRBMS1
AceView (NCBI)RBMS1
Genatlas (Paris)RBMS1
WikiGenes5937
SOURCE (Princeton)RBMS1
Genetics Home Reference (NIH)RBMS1
Genomic and cartography
GoldenPath hg38 (UCSC)RBMS1  -     chr2:160272151-160493807 -  2q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBMS1  -     2q24.2   [Description]    (hg19-Feb_2009)
EnsemblRBMS1 - 2q24.2 [CytoView hg19]  RBMS1 - 2q24.2 [CytoView hg38]
Mapping of homologs : NCBIRBMS1 [Mapview hg19]  RBMS1 [Mapview hg38]
OMIM602310   
Gene and transcription
Genbank (Entrez)AI675628 AK127157 AK225887 AK297812 AK309949
RefSeq transcript (Entrez)NM_002897 NM_016836 NM_016839
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBMS1
Cluster EST : UnigeneHs.708357 [ NCBI ]
CGAP (NCI)Hs.708357
Alternative Splicing GalleryENSG00000153250
Gene ExpressionRBMS1 [ NCBI-GEO ]   RBMS1 [ EBI - ARRAY_EXPRESS ]   RBMS1 [ SEEK ]   RBMS1 [ MEM ]
Gene Expression Viewer (FireBrowse)RBMS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5937
GTEX Portal (Tissue expression)RBMS1
Human Protein AtlasENSG00000153250-RBMS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP29558   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP29558  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP29558
Splice isoforms : SwissVarP29558
PhosPhoSitePlusP29558
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Hud_Sxl_RNA    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBMS1
DMDM Disease mutations5937
Blocks (Seattle)RBMS1
PDB (SRS)1X5O   
PDB (PDBSum)1X5O   
PDB (IMB)1X5O   
PDB (RSDB)1X5O   
Structural Biology KnowledgeBase1X5O   
SCOP (Structural Classification of Proteins)1X5O   
CATH (Classification of proteins structures)1X5O   
SuperfamilyP29558
Human Protein Atlas [tissue]ENSG00000153250-RBMS1 [tissue]
Peptide AtlasP29558
HPRD03814
IPIIPI00941661   IPI00033611   IPI00929296   IPI00102991   IPI01011353   
Protein Interaction databases
DIP (DOE-UCLA)P29558
IntAct (EBI)P29558
FunCoupENSG00000153250
BioGRIDRBMS1
STRING (EMBL)RBMS1
ZODIACRBMS1
Ontologies - Pathways
QuickGOP29558
Ontology : AmiGOdouble-stranded DNA binding  single-stranded DNA binding  RNA binding  RNA binding  protein binding  nucleus  DNA replication  RNA processing  
Ontology : EGO-EBIdouble-stranded DNA binding  single-stranded DNA binding  RNA binding  RNA binding  protein binding  nucleus  DNA replication  RNA processing  
NDEx NetworkRBMS1
Atlas of Cancer Signalling NetworkRBMS1
Wikipedia pathwaysRBMS1
Orthology - Evolution
OrthoDB5937
GeneTree (enSembl)ENSG00000153250
Phylogenetic Trees/Animal Genes : TreeFamRBMS1
HOVERGENP29558
HOGENOMP29558
Homologs : HomoloGeneRBMS1
Homology/Alignments : Family Browser (UCSC)RBMS1
Gene fusions - Rearrangements
Fusion : MitelmanITGB6/RBMS1 [2q24.2/2q24.2]  [t(2;2)(q24;q24)]  
Fusion : MitelmanPLA2R1/RBMS1 [2q24.2/2q24.2]  [del(2)(q24q24)]  
Fusion: TCGA_MDACCITGB6 2q24.2 RBMS1 2q24.2 BLCA BRCA
Tumor Fusion PortalRBMS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBMS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBMS1
dbVarRBMS1
ClinVarRBMS1
1000_GenomesRBMS1 
Exome Variant ServerRBMS1
ExAC (Exome Aggregation Consortium)ENSG00000153250
GNOMAD BrowserENSG00000153250
Genetic variants : HAPMAP5937
Genomic Variants (DGV)RBMS1 [DGVbeta]
DECIPHERRBMS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBMS1 
Mutations
ICGC Data PortalRBMS1 
TCGA Data PortalRBMS1 
Broad Tumor PortalRBMS1
OASIS PortalRBMS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRBMS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBMS1
DgiDB (Drug Gene Interaction Database)RBMS1
DoCM (Curated mutations)RBMS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBMS1 (select a term)
intoGenRBMS1
Cancer3DRBMS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602310   
Orphanet
DisGeNETRBMS1
MedgenRBMS1
Genetic Testing Registry RBMS1
NextProtP29558 [Medical]
TSGene5937
GENETestsRBMS1
Target ValidationRBMS1
Huge Navigator RBMS1 [HugePedia]
snp3D : Map Gene to Disease5937
BioCentury BCIQRBMS1
ClinGenRBMS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5937
Chemical/Pharm GKB GenePA34273
Clinical trialRBMS1
Miscellaneous
canSAR (ICR)RBMS1 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBMS1
EVEXRBMS1
GoPubMedRBMS1
iHOPRBMS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:31:57 CET 2017

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