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RBMS2 (RNA binding motif single stranded interacting protein 2)

Identity

Alias_symbol (synonym)SCR3
Other alias
HGNC (Hugo) RBMS2
LocusID (NCBI) 5939
Atlas_Id 57918
Location 12q13.3  [Link to chromosome band 12q13]
Location_base_pair Starts at 56521825 and ends at 56596196 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KMT2A (11q23.3) / RBMS2 (12q13.3)RBMS2 (12q13.3) / ATP5B (12q13.3)RBMS2 (12q13.3) / LITAF (16p13.13)
RBMS2 (12q13.3) / NAA38 (17p13.1)RBMS2 (12q13.3) / SARNP (12q13.2)RBMS2 (12q13.3) / TMBIM6 (12q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(12;16)(q13;p13) RBMS2/LITAF


External links

Nomenclature
HGNC (Hugo)RBMS2   9909
Cards
Entrez_Gene (NCBI)RBMS2  5939  RNA binding motif single stranded interacting protein 2
AliasesSCR3
GeneCards (Weizmann)RBMS2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr12:56521825-56596196 [Contig_View]  RBMS2 [Vega]
TCGA cBioPortalRBMS2
AceView (NCBI)RBMS2
Genatlas (Paris)RBMS2
WikiGenes5939
SOURCE (Princeton)RBMS2
Genetics Home Reference (NIH)RBMS2
Genomic and cartography
GoldenPath hg38 (UCSC)RBMS2  -     chr12:56521825-56596196 +  12q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBMS2  -     12q13.3   [Description]    (hg19-Feb_2009)
GoldenPathRBMS2 - 12q13.3 [CytoView hg19]  RBMS2 - 12q13.3 [CytoView hg38]
Mapping of homologs : NCBIRBMS2 [Mapview hg19]  RBMS2 [Mapview hg38]
OMIM602387   
Gene and transcription
Genbank (Entrez)AK096412 AK097342 AK125252 AK293315 AK299580
RefSeq transcript (Entrez)NM_002898
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBMS2
Cluster EST : UnigeneHs.683360 [ NCBI ]
CGAP (NCI)Hs.683360
Gene ExpressionRBMS2 [ NCBI-GEO ]   RBMS2 [ EBI - ARRAY_EXPRESS ]   RBMS2 [ SEEK ]   RBMS2 [ MEM ]
Gene Expression Viewer (FireBrowse)RBMS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5939
GTEX Portal (Tissue expression)RBMS2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15434   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15434  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15434
Splice isoforms : SwissVarQ15434
PhosPhoSitePlusQ15434
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBMS2
DMDM Disease mutations5939
Blocks (Seattle)RBMS2
PDB (RSDB)1X4E   
PDB Europe1X4E   
PDB (PDBSum)1X4E   
PDB (IMB)1X4E   
Structural Biology KnowledgeBase1X4E   
SCOP (Structural Classification of Proteins)1X4E   
CATH (Classification of proteins structures)1X4E   
SuperfamilyQ15434
Peptide AtlasQ15434
IPIIPI00003706   IPI00922692   IPI01022449   IPI01022509   IPI01022960   IPI01022795   IPI01022031   
Protein Interaction databases
DIP (DOE-UCLA)Q15434
IntAct (EBI)Q15434
BioGRIDRBMS2
STRING (EMBL)RBMS2
ZODIACRBMS2
Ontologies - Pathways
QuickGOQ15434
Ontology : AmiGORNA binding  RNA binding  mRNA 3'-UTR binding  nucleus  cytoplasm  cytosol  RNA processing  poly(A) binding  poly(U) RNA binding  ribonucleoprotein complex  
Ontology : EGO-EBIRNA binding  RNA binding  mRNA 3'-UTR binding  nucleus  cytoplasm  cytosol  RNA processing  poly(A) binding  poly(U) RNA binding  ribonucleoprotein complex  
NDEx NetworkRBMS2
Atlas of Cancer Signalling NetworkRBMS2
Wikipedia pathwaysRBMS2
Orthology - Evolution
OrthoDB5939
Phylogenetic Trees/Animal Genes : TreeFamRBMS2
HOGENOMQ15434
Homologs : HomoloGeneRBMS2
Homology/Alignments : Family Browser (UCSC)RBMS2
Gene fusions - Rearrangements
Fusion : QuiverRBMS2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBMS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBMS2
dbVarRBMS2
ClinVarRBMS2
1000_GenomesRBMS2 
Exome Variant ServerRBMS2
Varsome BrowserRBMS2
Genetic variants : HAPMAP5939
Genomic Variants (DGV)RBMS2 [DGVbeta]
DECIPHERRBMS2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBMS2 
Mutations
ICGC Data PortalRBMS2 
TCGA Data PortalRBMS2 
Broad Tumor PortalRBMS2
OASIS PortalRBMS2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBMS2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRBMS2
Mutations and Diseases : HGMDRBMS2
BioMutasearch RBMS2
DgiDB (Drug Gene Interaction Database)RBMS2
DoCM (Curated mutations)RBMS2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBMS2 (select a term)
intoGenRBMS2
Cancer3DRBMS2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602387   
Orphanet
DisGeNETRBMS2
MedgenRBMS2
Genetic Testing Registry RBMS2
NextProtQ15434 [Medical]
TSGene5939
GENETestsRBMS2
Target ValidationRBMS2
Huge Navigator RBMS2 [HugePedia]
snp3D : Map Gene to Disease5939
BioCentury BCIQRBMS2
ClinGenRBMS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5939
Chemical/Pharm GKB GenePA34275
Clinical trialRBMS2
Miscellaneous
canSAR (ICR)RBMS2 (select the gene name)
DataMed IndexRBMS2
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBMS2
EVEXRBMS2
GoPubMedRBMS2
iHOPRBMS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 18:04:26 CET 2019

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