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RBMS3 (RNA binding motif single stranded interacting protein 3)

Identity

Alias_namesRNA binding motif, single stranded interacting protein
RNA binding motif, single stranded interacting protein 3
Other alias-
HGNC (Hugo) RBMS3
LocusID (NCBI) 27303
Atlas_Id 52537
Location 3p24.1  [Link to chromosome band 3p24]
Location_base_pair Starts at 29281312 and ends at 30010395 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RBMS3 (3p24.1) / ROBO1 (3p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBMS3   13427
Cards
Entrez_Gene (NCBI)RBMS3  27303  RNA binding motif single stranded interacting protein 3
Aliases
GeneCards (Weizmann)RBMS3
Ensembl hg19 (Hinxton)ENSG00000144642 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144642 [Gene_View]  chr3:29281312-30010395 [Contig_View]  RBMS3 [Vega]
ICGC DataPortalENSG00000144642
TCGA cBioPortalRBMS3
AceView (NCBI)RBMS3
Genatlas (Paris)RBMS3
WikiGenes27303
SOURCE (Princeton)RBMS3
Genetics Home Reference (NIH)RBMS3
Genomic and cartography
GoldenPath hg38 (UCSC)RBMS3  -     chr3:29281312-30010395 +  3p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBMS3  -     3p24.1   [Description]    (hg19-Feb_2009)
EnsemblRBMS3 - 3p24.1 [CytoView hg19]  RBMS3 - 3p24.1 [CytoView hg38]
Mapping of homologs : NCBIRBMS3 [Mapview hg19]  RBMS3 [Mapview hg38]
OMIM605786   
Gene and transcription
Genbank (Entrez)AA428240 AF023259 AK093863 AK097311 AK292789
RefSeq transcript (Entrez)NM_001003792 NM_001003793 NM_001177711 NM_001177712 NM_014483
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBMS3
Cluster EST : UnigeneHs.221436 [ NCBI ]
CGAP (NCI)Hs.221436
Alternative Splicing GalleryENSG00000144642
Gene ExpressionRBMS3 [ NCBI-GEO ]   RBMS3 [ EBI - ARRAY_EXPRESS ]   RBMS3 [ SEEK ]   RBMS3 [ MEM ]
Gene Expression Viewer (FireBrowse)RBMS3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27303
GTEX Portal (Tissue expression)RBMS3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6XE24   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6XE24  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6XE24
Splice isoforms : SwissVarQ6XE24
PhosPhoSitePlusQ6XE24
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Hud_Sxl_RNA    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBMS3
DMDM Disease mutations27303
Blocks (Seattle)RBMS3
SuperfamilyQ6XE24
Human Protein AtlasENSG00000144642
Peptide AtlasQ6XE24
HPRD16155
IPIIPI00472404   IPI00298424   IPI00985081   IPI00827856   IPI00927842   IPI00924610   IPI00925528   
Protein Interaction databases
DIP (DOE-UCLA)Q6XE24
IntAct (EBI)Q6XE24
FunCoupENSG00000144642
BioGRIDRBMS3
STRING (EMBL)RBMS3
ZODIACRBMS3
Ontologies - Pathways
QuickGOQ6XE24
Ontology : AmiGOmRNA 3'-UTR binding  cytoplasm  positive regulation of translation  
Ontology : EGO-EBImRNA 3'-UTR binding  cytoplasm  positive regulation of translation  
NDEx NetworkRBMS3
Atlas of Cancer Signalling NetworkRBMS3
Wikipedia pathwaysRBMS3
Orthology - Evolution
OrthoDB27303
GeneTree (enSembl)ENSG00000144642
Phylogenetic Trees/Animal Genes : TreeFamRBMS3
HOVERGENQ6XE24
HOGENOMQ6XE24
Homologs : HomoloGeneRBMS3
Homology/Alignments : Family Browser (UCSC)RBMS3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBMS3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBMS3
dbVarRBMS3
ClinVarRBMS3
1000_GenomesRBMS3 
Exome Variant ServerRBMS3
ExAC (Exome Aggregation Consortium)RBMS3 (select the gene name)
Genetic variants : HAPMAP27303
Genomic Variants (DGV)RBMS3 [DGVbeta]
DECIPHERRBMS3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBMS3 
Mutations
ICGC Data PortalRBMS3 
TCGA Data PortalRBMS3 
Broad Tumor PortalRBMS3
OASIS PortalRBMS3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBMS3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBMS3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBMS3
DgiDB (Drug Gene Interaction Database)RBMS3
DoCM (Curated mutations)RBMS3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBMS3 (select a term)
intoGenRBMS3
Cancer3DRBMS3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605786   
Orphanet
MedgenRBMS3
Genetic Testing Registry RBMS3
NextProtQ6XE24 [Medical]
TSGene27303
GENETestsRBMS3
Huge Navigator RBMS3 [HugePedia]
snp3D : Map Gene to Disease27303
BioCentury BCIQRBMS3
ClinGenRBMS3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27303
Chemical/Pharm GKB GenePA34276
Clinical trialRBMS3
Miscellaneous
canSAR (ICR)RBMS3 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBMS3
EVEXRBMS3
GoPubMedRBMS3
iHOPRBMS3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:34:30 CEST 2017

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