Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RBMX (RNA binding motif protein, X-linked)

Identity

Alias_namesRNA binding motif protein
Alias_symbol (synonym)RNMX
hnRNP-G
HNRNPG
Other aliasHNRPG
MRXS11
RBMXP1
RBMXRT
HGNC (Hugo) RBMX
LocusID (NCBI) 27316
Atlas_Id 43822
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 135951353 and ends at 135962939 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RBMX (Xq26.3) / BRF2 (8p11.23)RBMX (Xq26.3) / MAP2K3 (17p11.2)RBMX (Xq26.3) / RBMX (Xq26.3)
SPARC (5q33.1) / RBMX (Xq26.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBMX   9910
Cards
Entrez_Gene (NCBI)RBMX  27316  RNA binding motif protein, X-linked
AliasesHNRNPG; HNRPG; MRXS11; RBMXP1; 
RBMXRT; RNMX; hnRNP-G
GeneCards (Weizmann)RBMX
Ensembl hg19 (Hinxton)ENSG00000147274 [Gene_View]  chrX:135951353-135962939 [Contig_View]  RBMX [Vega]
Ensembl hg38 (Hinxton)ENSG00000147274 [Gene_View]  chrX:135951353-135962939 [Contig_View]  RBMX [Vega]
ICGC DataPortalENSG00000147274
TCGA cBioPortalRBMX
AceView (NCBI)RBMX
Genatlas (Paris)RBMX
WikiGenes27316
SOURCE (Princeton)RBMX
Genetics Home Reference (NIH)RBMX
Genomic and cartography
GoldenPath hg19 (UCSC)RBMX  -     chrX:135951353-135962939 -  Xq26.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBMX  -     Xq26.3   [Description]    (hg38-Dec_2013)
EnsemblRBMX - Xq26.3 [CytoView hg19]  RBMX - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBIRBMX [Mapview hg19]  RBMX [Mapview hg38]
OMIM300199   
Gene and transcription
Genbank (Entrez)AA160187 AK091520 AK096015 AK097941 AK304573
RefSeq transcript (Entrez)NM_001164803 NM_002139
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_012918 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)RBMX
Cluster EST : UnigeneHs.710162 [ NCBI ]
CGAP (NCI)Hs.710162
Alternative Splicing GalleryENSG00000147274
Gene ExpressionRBMX [ NCBI-GEO ]   RBMX [ EBI - ARRAY_EXPRESS ]   RBMX [ SEEK ]   RBMX [ MEM ]
Gene Expression Viewer (FireBrowse)RBMX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27316
GTEX Portal (Tissue expression)RBMX
Protein : pattern, domain, 3D structure
UniProt/SwissProtP38159   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP38159  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP38159
Splice isoforms : SwissVarP38159
PhosPhoSitePlusP38159
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RBM1CTR    RRM_dom   
Domain families : Pfam (Sanger)RBM1CTR (PF08081)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam08081    pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBMX
DMDM Disease mutations27316
Blocks (Seattle)RBMX
PDB (SRS)2MB0    2MKS   
PDB (PDBSum)2MB0    2MKS   
PDB (IMB)2MB0    2MKS   
PDB (RSDB)2MB0    2MKS   
Structural Biology KnowledgeBase2MB0    2MKS   
SCOP (Structural Classification of Proteins)2MB0    2MKS   
CATH (Classification of proteins structures)2MB0    2MKS   
SuperfamilyP38159
Human Protein AtlasENSG00000147274
Peptide AtlasP38159
HPRD02186
IPIIPI00304692   IPI00939558   IPI00552938   
Protein Interaction databases
DIP (DOE-UCLA)P38159
IntAct (EBI)P38159
FunCoupENSG00000147274
BioGRIDRBMX
STRING (EMBL)RBMX
ZODIACRBMX
Ontologies - Pathways
QuickGOP38159
Ontology : AmiGOnucleotide binding  regulation of alternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  core promoter binding  osteoblast differentiation  chromatin binding  RNA binding  RNA binding  mRNA binding  protein binding  extracellular space  nucleus  nucleoplasm  nuclear euchromatin  transcription from RNA polymerase II promoter  membrane protein ectodomain proteolysis  gene expression  membrane  intracellular ribonucleoprotein complex  supraspliceosomal complex  poly(A) RNA binding  positive regulation of transcription from RNA polymerase II promoter  negative regulation of mRNA splicing, via spliceosome  positive regulation of mRNA splicing, via spliceosome  protein homooligomerization  extracellular exosome  catalytic step 2 spliceosome  cellular response to interleukin-1  
Ontology : EGO-EBInucleotide binding  regulation of alternative mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  mRNA splicing, via spliceosome  core promoter binding  osteoblast differentiation  chromatin binding  RNA binding  RNA binding  mRNA binding  protein binding  extracellular space  nucleus  nucleoplasm  nuclear euchromatin  transcription from RNA polymerase II promoter  membrane protein ectodomain proteolysis  gene expression  membrane  intracellular ribonucleoprotein complex  supraspliceosomal complex  poly(A) RNA binding  positive regulation of transcription from RNA polymerase II promoter  negative regulation of mRNA splicing, via spliceosome  positive regulation of mRNA splicing, via spliceosome  protein homooligomerization  extracellular exosome  catalytic step 2 spliceosome  cellular response to interleukin-1  
Pathways : KEGGSpliceosome   
NDEx NetworkRBMX
Atlas of Cancer Signalling NetworkRBMX
Wikipedia pathwaysRBMX
Orthology - Evolution
OrthoDB27316
GeneTree (enSembl)ENSG00000147274
Phylogenetic Trees/Animal Genes : TreeFamRBMX
HOVERGENP38159
HOGENOMP38159
Homologs : HomoloGeneRBMX
Homology/Alignments : Family Browser (UCSC)RBMX
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBMX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBMX
dbVarRBMX
ClinVarRBMX
1000_GenomesRBMX 
Exome Variant ServerRBMX
ExAC (Exome Aggregation Consortium)RBMX (select the gene name)
Genetic variants : HAPMAP27316
Genomic Variants (DGV)RBMX [DGVbeta]
DECIPHER (Syndromes)X:135951353-135962939  ENSG00000147274
CONAN: Copy Number AnalysisRBMX 
Mutations
ICGC Data PortalRBMX 
TCGA Data PortalRBMX 
Broad Tumor PortalRBMX
OASIS PortalRBMX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBMX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBMX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch RBMX
DgiDB (Drug Gene Interaction Database)RBMX
DoCM (Curated mutations)RBMX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBMX (select a term)
intoGenRBMX
Cancer3DRBMX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300199   
Orphanet
MedgenRBMX
Genetic Testing Registry RBMX
NextProtP38159 [Medical]
TSGene27316
GENETestsRBMX
Huge Navigator RBMX [HugePedia]
snp3D : Map Gene to Disease27316
BioCentury BCIQRBMX
ClinGenRBMX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27316
Chemical/Pharm GKB GenePA34277
Clinical trialRBMX
Miscellaneous
canSAR (ICR)RBMX (select the gene name)
Probes
Litterature
PubMed94 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBMX
EVEXRBMX
GoPubMedRBMX
iHOPRBMX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:24:36 CET 2017

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