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RBMX2 (RNA binding motif protein, X-linked 2)

Identity

Alias_symbol (synonym)CGI-79
Snu17
Other alias
HGNC (Hugo) RBMX2
LocusID (NCBI) 51634
Atlas_Id 72537
Location Xq26.1  [Link to chromosome band Xq26]
Location_base_pair Starts at 130401969 and ends at 130413343 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBMX2   24282
Cards
Entrez_Gene (NCBI)RBMX2  51634  RNA binding motif protein, X-linked 2
AliasesCGI-79; Snu17
GeneCards (Weizmann)RBMX2
Ensembl hg19 (Hinxton)ENSG00000134597 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134597 [Gene_View]  chrX:130401969-130413343 [Contig_View]  RBMX2 [Vega]
ICGC DataPortalENSG00000134597
TCGA cBioPortalRBMX2
AceView (NCBI)RBMX2
Genatlas (Paris)RBMX2
WikiGenes51634
SOURCE (Princeton)RBMX2
Genetics Home Reference (NIH)RBMX2
Genomic and cartography
GoldenPath hg38 (UCSC)RBMX2  -     chrX:130401969-130413343 +  Xq26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBMX2  -     Xq26.1   [Description]    (hg19-Feb_2009)
EnsemblRBMX2 - Xq26.1 [CytoView hg19]  RBMX2 - Xq26.1 [CytoView hg38]
Mapping of homologs : NCBIRBMX2 [Mapview hg19]  RBMX2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF078865 AF151837 AK292855 AL050405 BC003676
RefSeq transcript (Entrez)NM_016024
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBMX2
Cluster EST : UnigeneHs.740515 [ NCBI ]
CGAP (NCI)Hs.740515
Alternative Splicing GalleryENSG00000134597
Gene ExpressionRBMX2 [ NCBI-GEO ]   RBMX2 [ EBI - ARRAY_EXPRESS ]   RBMX2 [ SEEK ]   RBMX2 [ MEM ]
Gene Expression Viewer (FireBrowse)RBMX2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51634
GTEX Portal (Tissue expression)RBMX2
Human Protein AtlasENSG00000134597-RBMX2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y388   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y388  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y388
Splice isoforms : SwissVarQ9Y388
PhosPhoSitePlusQ9Y388
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBMX2
DMDM Disease mutations51634
Blocks (Seattle)RBMX2
SuperfamilyQ9Y388
Human Protein Atlas [tissue]ENSG00000134597-RBMX2 [tissue]
Peptide AtlasQ9Y388
HPRD06470
IPIIPI00032597   IPI00647498   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y388
IntAct (EBI)Q9Y388
FunCoupENSG00000134597
BioGRIDRBMX2
STRING (EMBL)RBMX2
ZODIACRBMX2
Ontologies - Pathways
QuickGOQ9Y388
Ontology : AmiGOfirst spliceosomal transesterification activity  mRNA splicing, via spliceosome  RNA binding  RNA binding  protein binding  U2 snRNP  mRNA export from nucleus  RES complex  precatalytic spliceosome  catalytic step 2 spliceosome  
Ontology : EGO-EBIfirst spliceosomal transesterification activity  mRNA splicing, via spliceosome  RNA binding  RNA binding  protein binding  U2 snRNP  mRNA export from nucleus  RES complex  precatalytic spliceosome  catalytic step 2 spliceosome  
NDEx NetworkRBMX2
Atlas of Cancer Signalling NetworkRBMX2
Wikipedia pathwaysRBMX2
Orthology - Evolution
OrthoDB51634
GeneTree (enSembl)ENSG00000134597
Phylogenetic Trees/Animal Genes : TreeFamRBMX2
HOVERGENQ9Y388
HOGENOMQ9Y388
Homologs : HomoloGeneRBMX2
Homology/Alignments : Family Browser (UCSC)RBMX2
Gene fusions - Rearrangements
Tumor Fusion PortalRBMX2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBMX2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBMX2
dbVarRBMX2
ClinVarRBMX2
1000_GenomesRBMX2 
Exome Variant ServerRBMX2
ExAC (Exome Aggregation Consortium)ENSG00000134597
GNOMAD BrowserENSG00000134597
Genetic variants : HAPMAP51634
Genomic Variants (DGV)RBMX2 [DGVbeta]
DECIPHERRBMX2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBMX2 
Mutations
ICGC Data PortalRBMX2 
TCGA Data PortalRBMX2 
Broad Tumor PortalRBMX2
OASIS PortalRBMX2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBMX2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBMX2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBMX2
DgiDB (Drug Gene Interaction Database)RBMX2
DoCM (Curated mutations)RBMX2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBMX2 (select a term)
intoGenRBMX2
Cancer3DRBMX2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRBMX2
MedgenRBMX2
Genetic Testing Registry RBMX2
NextProtQ9Y388 [Medical]
TSGene51634
GENETestsRBMX2
Target ValidationRBMX2
Huge Navigator RBMX2 [HugePedia]
snp3D : Map Gene to Disease51634
BioCentury BCIQRBMX2
ClinGenRBMX2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51634
Chemical/Pharm GKB GenePA134872051
Clinical trialRBMX2
Miscellaneous
canSAR (ICR)RBMX2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBMX2
EVEXRBMX2
GoPubMedRBMX2
iHOPRBMX2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:00:28 CET 2017

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