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RBMXL1 (RNA binding motif protein, X-linked-like 1)

Identity

Alias_symbol (synonym)KAT3
Other aliasRBM1
HGNC (Hugo) RBMXL1
LocusID (NCBI) 494115
Atlas_Id 72538
Location 1p22.2  [Link to chromosome band 1p22]
Location_base_pair Starts at 89445139 and ends at 89458643 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBMXL1   25073
Cards
Entrez_Gene (NCBI)RBMXL1  494115  RNA binding motif protein, X-linked-like 1
AliasesRBM1
GeneCards (Weizmann)RBMXL1
Ensembl hg19 (Hinxton)ENSG00000213516 [Gene_View]  chr1:89445139-89458643 [Contig_View]  RBMXL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000213516 [Gene_View]  chr1:89445139-89458643 [Contig_View]  RBMXL1 [Vega]
ICGC DataPortalENSG00000213516
TCGA cBioPortalRBMXL1
AceView (NCBI)RBMXL1
Genatlas (Paris)RBMXL1
WikiGenes494115
SOURCE (Princeton)RBMXL1
Genetics Home Reference (NIH)RBMXL1
Genomic and cartography
GoldenPath hg19 (UCSC)RBMXL1  -     chr1:89445139-89458643 -  1p22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBMXL1  -     1p22.2   [Description]    (hg38-Dec_2013)
EnsemblRBMXL1 - 1p22.2 [CytoView hg19]  RBMXL1 - 1p22.2 [CytoView hg38]
Mapping of homologs : NCBIRBMXL1 [Mapview hg19]  RBMXL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL832554 AL832785 BC012942 BF901720 CR743094
RefSeq transcript (Entrez)NM_001162536 NM_019610
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)RBMXL1
Cluster EST : UnigeneHs.481898 [ NCBI ]
CGAP (NCI)Hs.481898
Alternative Splicing GalleryENSG00000213516
Gene ExpressionRBMXL1 [ NCBI-GEO ]   RBMXL1 [ EBI - ARRAY_EXPRESS ]   RBMXL1 [ SEEK ]   RBMXL1 [ MEM ]
Gene Expression Viewer (FireBrowse)RBMXL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)494115
GTEX Portal (Tissue expression)RBMXL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96E39   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96E39  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96E39
Splice isoforms : SwissVarQ96E39
PhosPhoSitePlusQ96E39
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RBM1CTR    RRM_dom   
Domain families : Pfam (Sanger)RBM1CTR (PF08081)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam08081    pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBMXL1
DMDM Disease mutations494115
Blocks (Seattle)RBMXL1
SuperfamilyQ96E39
Human Protein AtlasENSG00000213516
Peptide AtlasQ96E39
HPRD17417
IPIIPI00061178   
Protein Interaction databases
DIP (DOE-UCLA)Q96E39
IntAct (EBI)Q96E39
FunCoupENSG00000213516
BioGRIDRBMXL1
STRING (EMBL)RBMXL1
ZODIACRBMXL1
Ontologies - Pathways
QuickGOQ96E39
Ontology : AmiGOnucleotide binding  RNA binding  nucleus  mRNA processing  RNA splicing  ribonucleoprotein complex  
Ontology : EGO-EBInucleotide binding  RNA binding  nucleus  mRNA processing  RNA splicing  ribonucleoprotein complex  
Pathways : KEGGSpliceosome   
NDEx NetworkRBMXL1
Atlas of Cancer Signalling NetworkRBMXL1
Wikipedia pathwaysRBMXL1
Orthology - Evolution
OrthoDB494115
GeneTree (enSembl)ENSG00000213516
Phylogenetic Trees/Animal Genes : TreeFamRBMXL1
HOVERGENQ96E39
HOGENOMQ96E39
Homologs : HomoloGeneRBMXL1
Homology/Alignments : Family Browser (UCSC)RBMXL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBMXL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBMXL1
dbVarRBMXL1
ClinVarRBMXL1
1000_GenomesRBMXL1 
Exome Variant ServerRBMXL1
ExAC (Exome Aggregation Consortium)RBMXL1 (select the gene name)
Genetic variants : HAPMAP494115
Genomic Variants (DGV)RBMXL1 [DGVbeta]
DECIPHER (Syndromes)1:89445139-89458643  ENSG00000213516
CONAN: Copy Number AnalysisRBMXL1 
Mutations
ICGC Data PortalRBMXL1 
TCGA Data PortalRBMXL1 
Broad Tumor PortalRBMXL1
OASIS PortalRBMXL1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRBMXL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBMXL1
DgiDB (Drug Gene Interaction Database)RBMXL1
DoCM (Curated mutations)RBMXL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBMXL1 (select a term)
intoGenRBMXL1
Cancer3DRBMXL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRBMXL1
Genetic Testing Registry RBMXL1
NextProtQ96E39 [Medical]
TSGene494115
GENETestsRBMXL1
Huge Navigator RBMXL1 [HugePedia]
snp3D : Map Gene to Disease494115
BioCentury BCIQRBMXL1
ClinGenRBMXL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD494115
Chemical/Pharm GKB GenePA165752300
Clinical trialRBMXL1
Miscellaneous
canSAR (ICR)RBMXL1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBMXL1
EVEXRBMXL1
GoPubMedRBMXL1
iHOPRBMXL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:44 CET 2017

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