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RBMXL1 (RBMX like 1)

Identity

Alias (NCBI)RBM1
HGNC (Hugo) RBMXL1
HGNC Alias symbKAT3
HGNC Alias namekynurenine aminotransferase III
LocusID (NCBI) 494115
Atlas_Id 72538
Location 1p22.2  [Link to chromosome band 1p22]
Location_base_pair Starts at 88979456 and ends at 88992960 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RBMXL1   25073
Cards
Entrez_Gene (NCBI)RBMXL1    RBMX like 1
AliasesRBM1
GeneCards (Weizmann)RBMXL1
Ensembl hg19 (Hinxton)ENSG00000213516 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213516 [Gene_View]  ENSG00000213516 [Sequence]  chr1:88979456-88992960 [Contig_View]  RBMXL1 [Vega]
ICGC DataPortalENSG00000213516
TCGA cBioPortalRBMXL1
AceView (NCBI)RBMXL1
Genatlas (Paris)RBMXL1
SOURCE (Princeton)RBMXL1
Genetics Home Reference (NIH)RBMXL1
Genomic and cartography
GoldenPath hg38 (UCSC)RBMXL1  -     chr1:88979456-88992960 -  1p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBMXL1  -     1p22.2   [Description]    (hg19-Feb_2009)
GoldenPathRBMXL1 - 1p22.2 [CytoView hg19]  RBMXL1 - 1p22.2 [CytoView hg38]
ImmunoBaseENSG00000213516
Genome Data Viewer NCBIRBMXL1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AL832554 AL832785 BC012942 BF901720 CR743094
RefSeq transcript (Entrez)NM_001162536 NM_019610
Consensus coding sequences : CCDS (NCBI)RBMXL1
Gene ExpressionRBMXL1 [ NCBI-GEO ]   RBMXL1 [ EBI - ARRAY_EXPRESS ]   RBMXL1 [ SEEK ]   RBMXL1 [ MEM ]
Gene Expression Viewer (FireBrowse)RBMXL1 [ Firebrowse - Broad ]
GenevisibleExpression of RBMXL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)494115
GTEX Portal (Tissue expression)RBMXL1
Human Protein AtlasENSG00000213516-RBMXL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96E39   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96E39  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96E39
PhosPhoSitePlusQ96E39
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RBM1CTR    RRM_dom    RRM_dom_euk   
Domain families : Pfam (Sanger)RBM1CTR (PF08081)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam08081    pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  RRM_1 (SM00361)  
Conserved Domain (NCBI)RBMXL1
SuperfamilyQ96E39
AlphaFold pdb e-kbQ96E39   
Human Protein Atlas [tissue]ENSG00000213516-RBMXL1 [tissue]
HPRD17417
Protein Interaction databases
DIP (DOE-UCLA)Q96E39
IntAct (EBI)Q96E39
BioGRIDRBMXL1
STRING (EMBL)RBMXL1
ZODIACRBMXL1
Ontologies - Pathways
QuickGOQ96E39
Ontology : AmiGOsingle-stranded RNA binding  spliceosomal complex  mRNA splice site selection  positive regulation of transcription, DNA-templated  positive regulation of mRNA splicing, via spliceosome  
Ontology : EGO-EBIsingle-stranded RNA binding  spliceosomal complex  mRNA splice site selection  positive regulation of transcription, DNA-templated  positive regulation of mRNA splicing, via spliceosome  
NDEx NetworkRBMXL1
Atlas of Cancer Signalling NetworkRBMXL1
Wikipedia pathwaysRBMXL1
Orthology - Evolution
OrthoDB494115
GeneTree (enSembl)ENSG00000213516
Phylogenetic Trees/Animal Genes : TreeFamRBMXL1
Homologs : HomoloGeneRBMXL1
Homology/Alignments : Family Browser (UCSC)RBMXL1
Gene fusions - Rearrangements
Fusion : QuiverRBMXL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBMXL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBMXL1
dbVarRBMXL1
ClinVarRBMXL1
MonarchRBMXL1
1000_GenomesRBMXL1 
Exome Variant ServerRBMXL1
GNOMAD BrowserENSG00000213516
Varsome BrowserRBMXL1
ACMGRBMXL1 variants
VarityQ96E39
Genomic Variants (DGV)RBMXL1 [DGVbeta]
DECIPHERRBMXL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBMXL1 
Mutations
ICGC Data PortalRBMXL1 
TCGA Data PortalRBMXL1 
Broad Tumor PortalRBMXL1
OASIS PortalRBMXL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBMXL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRBMXL1
Mutations and Diseases : HGMDRBMXL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRBMXL1
DgiDB (Drug Gene Interaction Database)RBMXL1
DoCM (Curated mutations)RBMXL1
CIViC (Clinical Interpretations of Variants in Cancer)RBMXL1
Cancer3DRBMXL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRBMXL1
MedgenRBMXL1
Genetic Testing Registry RBMXL1
NextProtQ96E39 [Medical]
GENETestsRBMXL1
Target ValidationRBMXL1
Huge Navigator RBMXL1 [HugePedia]
ClinGenRBMXL1
Clinical trials, drugs, therapy
MyCancerGenomeRBMXL1
Protein Interactions : CTDRBMXL1
Pharm GKB GenePA165752300
PharosQ96E39
Clinical trialRBMXL1
Miscellaneous
canSAR (ICR)RBMXL1
HarmonizomeRBMXL1
DataMed IndexRBMXL1
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRBMXL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:18:05 CEST 2021

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