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RBMXL2 (RNA binding motif protein, X-linked like 2)

Identity

Alias_symbol (synonym)HNRNPG-T
HNRPGT
Other aliasHNRNPGT
HGNC (Hugo) RBMXL2
LocusID (NCBI) 27288
Atlas_Id 52215
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 7088934 and ends at 7091148 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBMXL2   17886
Cards
Entrez_Gene (NCBI)RBMXL2  27288  RNA binding motif protein, X-linked like 2
AliasesHNRNPG-T; HNRNPGT; HNRPGT
GeneCards (Weizmann)RBMXL2
Ensembl hg19 (Hinxton)ENSG00000170748 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170748 [Gene_View]  chr11:7088934-7091148 [Contig_View]  RBMXL2 [Vega]
ICGC DataPortalENSG00000170748
TCGA cBioPortalRBMXL2
AceView (NCBI)RBMXL2
Genatlas (Paris)RBMXL2
WikiGenes27288
SOURCE (Princeton)RBMXL2
Genetics Home Reference (NIH)RBMXL2
Genomic and cartography
GoldenPath hg38 (UCSC)RBMXL2  -     chr11:7088934-7091148 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBMXL2  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblRBMXL2 - 11p15.4 [CytoView hg19]  RBMXL2 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIRBMXL2 [Mapview hg19]  RBMXL2 [Mapview hg38]
OMIM605444   
Gene and transcription
Genbank (Entrez)AF069682 AK292271 BC029295 BC057796 BX091666
RefSeq transcript (Entrez)NM_014469
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBMXL2
Cluster EST : UnigeneHs.121605 [ NCBI ]
CGAP (NCI)Hs.121605
Alternative Splicing GalleryENSG00000170748
Gene ExpressionRBMXL2 [ NCBI-GEO ]   RBMXL2 [ EBI - ARRAY_EXPRESS ]   RBMXL2 [ SEEK ]   RBMXL2 [ MEM ]
Gene Expression Viewer (FireBrowse)RBMXL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27288
GTEX Portal (Tissue expression)RBMXL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75526   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75526  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75526
Splice isoforms : SwissVarO75526
PhosPhoSitePlusO75526
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RBM1CTR    RRM_dom    RRM_dom_euk   
Domain families : Pfam (Sanger)RBM1CTR (PF08081)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam08081    pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  RRM_1 (SM00361)  
Conserved Domain (NCBI)RBMXL2
DMDM Disease mutations27288
Blocks (Seattle)RBMXL2
SuperfamilyO75526
Human Protein AtlasENSG00000170748
Peptide AtlasO75526
HPRD05672
IPIIPI00004450   IPI00975815   
Protein Interaction databases
DIP (DOE-UCLA)O75526
IntAct (EBI)O75526
FunCoupENSG00000170748
BioGRIDRBMXL2
STRING (EMBL)RBMXL2
ZODIACRBMXL2
Ontologies - Pathways
QuickGOO75526
Ontology : AmiGORNA binding  nucleus  intracellular ribonucleoprotein complex  
Ontology : EGO-EBIRNA binding  nucleus  intracellular ribonucleoprotein complex  
Pathways : KEGGSpliceosome   
NDEx NetworkRBMXL2
Atlas of Cancer Signalling NetworkRBMXL2
Wikipedia pathwaysRBMXL2
Orthology - Evolution
OrthoDB27288
GeneTree (enSembl)ENSG00000170748
Phylogenetic Trees/Animal Genes : TreeFamRBMXL2
HOVERGENO75526
HOGENOMO75526
Homologs : HomoloGeneRBMXL2
Homology/Alignments : Family Browser (UCSC)RBMXL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBMXL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBMXL2
dbVarRBMXL2
ClinVarRBMXL2
1000_GenomesRBMXL2 
Exome Variant ServerRBMXL2
ExAC (Exome Aggregation Consortium)RBMXL2 (select the gene name)
Genetic variants : HAPMAP27288
Genomic Variants (DGV)RBMXL2 [DGVbeta]
DECIPHERRBMXL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBMXL2 
Mutations
ICGC Data PortalRBMXL2 
TCGA Data PortalRBMXL2 
Broad Tumor PortalRBMXL2
OASIS PortalRBMXL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBMXL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBMXL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBMXL2
DgiDB (Drug Gene Interaction Database)RBMXL2
DoCM (Curated mutations)RBMXL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBMXL2 (select a term)
intoGenRBMXL2
Cancer3DRBMXL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605444   
Orphanet
MedgenRBMXL2
Genetic Testing Registry RBMXL2
NextProtO75526 [Medical]
TSGene27288
GENETestsRBMXL2
Target ValidationRBMXL2
Huge Navigator RBMXL2 [HugePedia]
snp3D : Map Gene to Disease27288
BioCentury BCIQRBMXL2
ClinGenRBMXL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27288
Chemical/Pharm GKB GenePA162400840
Clinical trialRBMXL2
Miscellaneous
canSAR (ICR)RBMXL2 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBMXL2
EVEXRBMXL2
GoPubMedRBMXL2
iHOPRBMXL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:12:44 CEST 2017

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