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RBMXL3 (RBMX like 3)

Identity

Alias (NCBI)CXorf55
HGNC (Hugo) RBMXL3
HGNC Alias symbFLJ40249
HGNC Previous nameCXorf55
HGNC Previous namechromosome X open reading frame 55
LocusID (NCBI) 139804
Atlas_Id 72539
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 115189400 and ends at 115192868 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBMXL3   26859
Cards
Entrez_Gene (NCBI)RBMXL3  139804  RBMX like 3
AliasesCXorf55
GeneCards (Weizmann)RBMXL3
Ensembl hg19 (Hinxton)ENSG00000175718 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175718 [Gene_View]  ENSG00000175718 [Sequence]  chrX:115189400-115192868 [Contig_View]  RBMXL3 [Vega]
ICGC DataPortalENSG00000175718
TCGA cBioPortalRBMXL3
AceView (NCBI)RBMXL3
Genatlas (Paris)RBMXL3
WikiGenes139804
SOURCE (Princeton)RBMXL3
Genetics Home Reference (NIH)RBMXL3
Genomic and cartography
GoldenPath hg38 (UCSC)RBMXL3  -     chrX:115189400-115192868 +  Xq23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBMXL3  -     Xq23   [Description]    (hg19-Feb_2009)
GoldenPathRBMXL3 - Xq23 [CytoView hg19]  RBMXL3 - Xq23 [CytoView hg38]
ImmunoBaseENSG00000175718
genome Data Viewer NCBIRBMXL3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK097568 AK301904 DB069571
RefSeq transcript (Entrez)NM_001145346 NM_152425
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBMXL3
Alternative Splicing GalleryENSG00000175718
Gene ExpressionRBMXL3 [ NCBI-GEO ]   RBMXL3 [ EBI - ARRAY_EXPRESS ]   RBMXL3 [ SEEK ]   RBMXL3 [ MEM ]
Gene Expression Viewer (FireBrowse)RBMXL3 [ Firebrowse - Broad ]
GenevisibleExpression of RBMXL3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139804
GTEX Portal (Tissue expression)RBMXL3
Human Protein AtlasENSG00000175718-RBMXL3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7X1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7X1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7X1
Splice isoforms : SwissVarQ8N7X1
PhosPhoSitePlusQ8N7X1
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBMXL3
DMDM Disease mutations139804
Blocks (Seattle)RBMXL3
SuperfamilyQ8N7X1
Human Protein Atlas [tissue]ENSG00000175718-RBMXL3 [tissue]
Peptide AtlasQ8N7X1
HPRD06567
IPIIPI00167369   IPI00923470   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7X1
IntAct (EBI)Q8N7X1
FunCoupENSG00000175718
BioGRIDRBMXL3
STRING (EMBL)RBMXL3
ZODIACRBMXL3
Ontologies - Pathways
QuickGOQ8N7X1
Ontology : AmiGOmRNA splicing, via spliceosome  mRNA binding  U1 snRNP  U1 snRNA binding  U2-type prespliceosome  
Ontology : EGO-EBImRNA splicing, via spliceosome  mRNA binding  U1 snRNP  U1 snRNA binding  U2-type prespliceosome  
NDEx NetworkRBMXL3
Atlas of Cancer Signalling NetworkRBMXL3
Wikipedia pathwaysRBMXL3
Orthology - Evolution
OrthoDB139804
GeneTree (enSembl)ENSG00000175718
Phylogenetic Trees/Animal Genes : TreeFamRBMXL3
HOGENOMQ8N7X1
Homologs : HomoloGeneRBMXL3
Homology/Alignments : Family Browser (UCSC)RBMXL3
Gene fusions - Rearrangements
Fusion : QuiverRBMXL3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBMXL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBMXL3
dbVarRBMXL3
ClinVarRBMXL3
1000_GenomesRBMXL3 
Exome Variant ServerRBMXL3
GNOMAD BrowserENSG00000175718
Varsome BrowserRBMXL3
Genetic variants : HAPMAP139804
Genomic Variants (DGV)RBMXL3 [DGVbeta]
DECIPHERRBMXL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBMXL3 
Mutations
ICGC Data PortalRBMXL3 
TCGA Data PortalRBMXL3 
Broad Tumor PortalRBMXL3
OASIS PortalRBMXL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBMXL3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRBMXL3
Mutations and Diseases : HGMDRBMXL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBMXL3
DgiDB (Drug Gene Interaction Database)RBMXL3
DoCM (Curated mutations)RBMXL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBMXL3 (select a term)
intoGenRBMXL3
Cancer3DRBMXL3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRBMXL3
MedgenRBMXL3
Genetic Testing Registry RBMXL3
NextProtQ8N7X1 [Medical]
TSGene139804
GENETestsRBMXL3
Target ValidationRBMXL3
Huge Navigator RBMXL3 [HugePedia]
snp3D : Map Gene to Disease139804
BioCentury BCIQRBMXL3
ClinGenRBMXL3
Clinical trials, drugs, therapy
Protein Interactions : CTD139804
Pharm GKB GenePA164725338
Clinical trialRBMXL3
Miscellaneous
canSAR (ICR)RBMXL3 (select the gene name)
HarmonizomeRBMXL3
DataMed IndexRBMXL3
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBMXL3
EVEXRBMXL3
GoPubMedRBMXL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:32:37 CEST 2020

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