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RBMY1A1 (RNA binding motif protein, Y-linked, family 1, member A1)

Identity

Other namesRBM
RBM1
RBM2
RBMY
RBMY1C
YRRM1
YRRM2
HGNC (Hugo) RBMY1A1
LocusID (NCBI) 5940
Atlas_Id 42073
Location Yq11.223
Location_base_pair Starts at 23673258 and ends at 23687672 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RBMY1A1   9912
Cards
Entrez_Gene (NCBI)RBMY1A1  5940  RNA binding motif protein, Y-linked, family 1, member A1
GeneCards (Weizmann)RBMY1A1
Ensembl hg19 (Hinxton)ENSG00000234414 [Gene_View]  chrY:23673258-23687672 [Contig_View]  RBMY1A1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000234414 [Gene_View]  chrY:23673258-23687672 [Contig_View]  RBMY1A1 [Vega]
ICGC DataPortalENSG00000234414
TCGA cBioPortalRBMY1A1
AceView (NCBI)RBMY1A1
Genatlas (Paris)RBMY1A1
WikiGenes5940
SOURCE (Princeton)RBMY1A1
Genomic and cartography
GoldenPath hg19 (UCSC)RBMY1A1  -     chrY:23673258-23687672 +  Yq11.223   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBMY1A1  -     Yq11.223   [Description]    (hg38-Dec_2013)
EnsemblRBMY1A1 - Yq11.223 [CytoView hg19]  RBMY1A1 - Yq11.223 [CytoView hg38]
Mapping of homologs : NCBIRBMY1A1 [Mapview hg19]  RBMY1A1 [Mapview hg38]
OMIM400006   415000   
Gene and transcription
Genbank (Entrez)BC047768 BC070298 BC146853 BU568309 BX119894
RefSeq transcript (Entrez)NM_001007526 NM_005058
RefSeq genomic (Entrez)NC_000024 NG_004832 NG_012805 NT_011875
Consensus coding sequences : CCDS (NCBI)RBMY1A1
Cluster EST : UnigeneHs.380450 [ NCBI ]
CGAP (NCI)Hs.380450
Alternative Splicing : Fast-db (Paris)GSHG0032690
Alternative Splicing GalleryENSG00000234414
Gene ExpressionRBMY1A1 [ NCBI-GEO ]     RBMY1A1 [ SEEK ]   RBMY1A1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DJD3 (Uniprot)
NextProtP0DJD3  [Medical]
With graphics : InterProP0DJD3
Splice isoforms : SwissVarP0DJD3 (Swissvar)
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RBM1CTR    RRM_dom   
Related proteins : CluSTrP0DJD3
Domain families : Pfam (Sanger)RBM1CTR (PF08081)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam08081    pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
DMDM Disease mutations5940
Blocks (Seattle)P0DJD3
PDB (SRS)2FY1   
PDB (PDBSum)2FY1   
PDB (IMB)2FY1   
PDB (RSDB)2FY1   
Human Protein AtlasENSG00000234414
Peptide AtlasP0DJD3
HPRD02450
Protein Interaction databases
DIP (DOE-UCLA)P0DJD3
IntAct (EBI)P0DJD3
FunCoupENSG00000234414
BioGRIDRBMY1A1
IntegromeDBRBMY1A1
STRING (EMBL)RBMY1A1
Ontologies - Pathways
QuickGOP0DJD3
Ontology : AmiGOnucleotide binding  regulation of alternative mRNA splicing, via spliceosome  mRNA binding  protein binding  nucleus  mRNA processing  RNA splicing  
Ontology : EGO-EBInucleotide binding  regulation of alternative mRNA splicing, via spliceosome  mRNA binding  protein binding  nucleus  mRNA processing  RNA splicing  
Protein Interaction DatabaseRBMY1A1
DoCM (Curated mutations)RBMY1A1
Wikipedia pathwaysRBMY1A1
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerRBMY1A1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBMY1A1
dbVarRBMY1A1
ClinVarRBMY1A1
1000_GenomesRBMY1A1 
Exome Variant ServerRBMY1A1
SNP (GeneSNP Utah)RBMY1A1
SNP : HGBaseRBMY1A1
Genetic variants : HAPMAPRBMY1A1
Genomic Variants (DGV)RBMY1A1 [DGVbeta]
Mutations
ICGC Data PortalRBMY1A1 
TCGA Data PortalRBMY1A1 
Tumor PortalRBMY1A1
Somatic Mutations in Cancer : COSMICRBMY1A1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)Y:23673258-23687672
CONAN: Copy Number AnalysisRBMY1A1 
Mutations and Diseases : HGMDRBMY1A1
OMIM400006    415000   
MedgenRBMY1A1
NextProtP0DJD3 [Medical]
GENETestsRBMY1A1
Disease Genetic AssociationRBMY1A1
Huge Navigator RBMY1A1 [HugePedia]  RBMY1A1 [HugeCancerGEM]
snp3D : Map Gene to Disease5940
DGIdb (Drug Gene Interaction db)RBMY1A1
General knowledge
Homologs : HomoloGeneRBMY1A1
Homology/Alignments : Family Browser (UCSC)RBMY1A1
Phylogenetic Trees/Animal Genes : TreeFamRBMY1A1
Chemical/Protein Interactions : CTD5940
Chemical/Pharm GKB GenePA34279
Clinical trialRBMY1A1
Cancer Resource (Charite)ENSG00000234414
Other databases
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
CoreMineRBMY1A1
GoPubMedRBMY1A1
iHOPRBMY1A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Apr 13 15:07:39 CEST 2015

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