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RBMY1B (RNA binding motif protein, Y-linked, family 1, member B)

Identity

Other alias-
HGNC (Hugo) RBMY1B
LocusID (NCBI) 378948
Atlas_Id 78810
Location Yq11.223  [Link to chromosome band Yq11]
Location_base_pair Starts at 21511338 and ends at 21525554 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBMY1B   23914
Cards
Entrez_Gene (NCBI)RBMY1B  378948  RNA binding motif protein, Y-linked, family 1, member B
Aliases
GeneCards (Weizmann)RBMY1B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrY:21511338-21525554 [Contig_View]  RBMY1B [Vega]
TCGA cBioPortalRBMY1B
AceView (NCBI)RBMY1B
Genatlas (Paris)RBMY1B
WikiGenes378948
SOURCE (Princeton)RBMY1B
Genetics Home Reference (NIH)RBMY1B
Genomic and cartography
GoldenPath hg38 (UCSC)RBMY1B  -     chrY:21511338-21525554 +  Yq11.223   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBMY1B  -     Yq11.223   [Description]    (hg19-Feb_2009)
EnsemblRBMY1B - Yq11.223 [CytoView hg19]  RBMY1B - Yq11.223 [CytoView hg38]
Mapping of homologs : NCBIRBMY1B [Mapview hg19]  RBMY1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136862 BC140758 BC144459
RefSeq transcript (Entrez)NM_001006121 NM_001320948
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBMY1B
Cluster EST : UnigeneHs.380450 [ NCBI ]
CGAP (NCI)Hs.380450
Gene ExpressionRBMY1B [ NCBI-GEO ]   RBMY1B [ EBI - ARRAY_EXPRESS ]   RBMY1B [ SEEK ]   RBMY1B [ MEM ]
Gene Expression Viewer (FireBrowse)RBMY1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)378948
GTEX Portal (Tissue expression)RBMY1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NDE4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NDE4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NDE4
Splice isoforms : SwissVarA6NDE4
PhosPhoSitePlusA6NDE4
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RBM1CTR    RRM_dom   
Domain families : Pfam (Sanger)RBM1CTR (PF08081)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam08081    pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBMY1B
DMDM Disease mutations378948
Blocks (Seattle)RBMY1B
SuperfamilyA6NDE4
Peptide AtlasA6NDE4
HPRD17958
IPIIPI00479500   
Protein Interaction databases
DIP (DOE-UCLA)A6NDE4
IntAct (EBI)A6NDE4
BioGRIDRBMY1B
STRING (EMBL)RBMY1B
ZODIACRBMY1B
Ontologies - Pathways
QuickGOA6NDE4
Ontology : AmiGORNA binding  protein binding  nucleus  mRNA processing  spermatogenesis  RNA splicing  male gonad development  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  mRNA processing  spermatogenesis  RNA splicing  male gonad development  
NDEx NetworkRBMY1B
Atlas of Cancer Signalling NetworkRBMY1B
Wikipedia pathwaysRBMY1B
Orthology - Evolution
OrthoDB378948
Phylogenetic Trees/Animal Genes : TreeFamRBMY1B
HOVERGENA6NDE4
HOGENOMA6NDE4
Homologs : HomoloGeneRBMY1B
Homology/Alignments : Family Browser (UCSC)RBMY1B
Gene fusions - Rearrangements
Tumor Fusion PortalRBMY1B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBMY1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBMY1B
dbVarRBMY1B
ClinVarRBMY1B
1000_GenomesRBMY1B 
Exome Variant ServerRBMY1B
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP378948
Genomic Variants (DGV)RBMY1B [DGVbeta]
DECIPHERRBMY1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBMY1B 
Mutations
ICGC Data PortalRBMY1B 
TCGA Data PortalRBMY1B 
Broad Tumor PortalRBMY1B
OASIS PortalRBMY1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBMY1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBMY1B
BioMutasearch RBMY1B
DgiDB (Drug Gene Interaction Database)RBMY1B
DoCM (Curated mutations)RBMY1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBMY1B (select a term)
intoGenRBMY1B
Cancer3DRBMY1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRBMY1B
MedgenRBMY1B
Genetic Testing Registry RBMY1B
NextProtA6NDE4 [Medical]
TSGene378948
GENETestsRBMY1B
Target ValidationRBMY1B
Huge Navigator RBMY1B [HugePedia]
snp3D : Map Gene to Disease378948
BioCentury BCIQRBMY1B
ClinGenRBMY1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD378948
Chemical/Pharm GKB GenePA134872137
Clinical trialRBMY1B
Miscellaneous
canSAR (ICR)RBMY1B (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBMY1B
EVEXRBMY1B
GoPubMedRBMY1B
iHOPRBMY1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:01:09 CET 2017

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