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RBMY1D (RNA binding motif protein, Y-linked, family 1, member D)

Identity

Other alias-
HGNC (Hugo) RBMY1D
LocusID (NCBI) 378949
Atlas_Id 72542
Location Yq11.223  [Link to chromosome band Yq11]
Location_base_pair Starts at 23673264 and ends at 23687672 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBMY1D   23915
Cards
Entrez_Gene (NCBI)RBMY1D  378949  RNA binding motif protein, Y-linked, family 1, member D
Aliases
GeneCards (Weizmann)RBMY1D
Ensembl hg19 (Hinxton)ENSG00000244395 [Gene_View]  chrY:23673264-23687672 [Contig_View]  RBMY1D [Vega]
Ensembl hg38 (Hinxton)ENSG00000244395 [Gene_View]  chrY:23673264-23687672 [Contig_View]  RBMY1D [Vega]
ICGC DataPortalENSG00000244395
TCGA cBioPortalRBMY1D
AceView (NCBI)RBMY1D
Genatlas (Paris)RBMY1D
WikiGenes378949
SOURCE (Princeton)RBMY1D
Genetics Home Reference (NIH)RBMY1D
Genomic and cartography
GoldenPath hg19 (UCSC)RBMY1D  -     chrY:23673264-23687672 +  Yq11.223   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBMY1D  -     Yq11.223   [Description]    (hg38-Dec_2013)
EnsemblRBMY1D - Yq11.223 [CytoView hg19]  RBMY1D - Yq11.223 [CytoView hg38]
Mapping of homologs : NCBIRBMY1D [Mapview hg19]  RBMY1D [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136862 BC144422 BC144423 BC144459
RefSeq transcript (Entrez)NM_001006120
RefSeq genomic (Entrez)NC_000024 NG_004755 NT_011903
Consensus coding sequences : CCDS (NCBI)RBMY1D
Cluster EST : UnigeneHs.380450 [ NCBI ]
CGAP (NCI)Hs.380450
Alternative Splicing GalleryENSG00000244395
Gene ExpressionRBMY1D [ NCBI-GEO ]   RBMY1D [ EBI - ARRAY_EXPRESS ]   RBMY1D [ SEEK ]   RBMY1D [ MEM ]
Gene Expression Viewer (FireBrowse)RBMY1D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)378949
GTEX Portal (Tissue expression)RBMY1D
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7P1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7P1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7P1
Splice isoforms : SwissVarP0C7P1
PhosPhoSitePlusP0C7P1
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RBM1CTR    RRM_dom   
Domain families : Pfam (Sanger)RBM1CTR (PF08081)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam08081    pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBMY1D
DMDM Disease mutations378949
Blocks (Seattle)RBMY1D
SuperfamilyP0C7P1
Human Protein AtlasENSG00000244395
Peptide AtlasP0C7P1
HPRD17959
IPIIPI00215689   
Protein Interaction databases
DIP (DOE-UCLA)P0C7P1
IntAct (EBI)P0C7P1
FunCoupENSG00000244395
BioGRIDRBMY1D
STRING (EMBL)RBMY1D
ZODIACRBMY1D
Ontologies - Pathways
QuickGOP0C7P1
Ontology : AmiGOnucleotide binding  RNA binding  nucleus  mRNA processing  RNA splicing  
Ontology : EGO-EBInucleotide binding  RNA binding  nucleus  mRNA processing  RNA splicing  
NDEx NetworkRBMY1D
Atlas of Cancer Signalling NetworkRBMY1D
Wikipedia pathwaysRBMY1D
Orthology - Evolution
OrthoDB378949
GeneTree (enSembl)ENSG00000244395
Phylogenetic Trees/Animal Genes : TreeFamRBMY1D
HOVERGENP0C7P1
HOGENOMP0C7P1
Homologs : HomoloGeneRBMY1D
Homology/Alignments : Family Browser (UCSC)RBMY1D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBMY1D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBMY1D
dbVarRBMY1D
ClinVarRBMY1D
1000_GenomesRBMY1D 
Exome Variant ServerRBMY1D
ExAC (Exome Aggregation Consortium)RBMY1D (select the gene name)
Genetic variants : HAPMAP378949
Genomic Variants (DGV)RBMY1D [DGVbeta]
DECIPHER (Syndromes)Y:23673264-23687672  ENSG00000244395
CONAN: Copy Number AnalysisRBMY1D 
Mutations
ICGC Data PortalRBMY1D 
TCGA Data PortalRBMY1D 
Broad Tumor PortalRBMY1D
OASIS PortalRBMY1D [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRBMY1D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBMY1D
DgiDB (Drug Gene Interaction Database)RBMY1D
DoCM (Curated mutations)RBMY1D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBMY1D (select a term)
intoGenRBMY1D
Cancer3DRBMY1D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRBMY1D
Genetic Testing Registry RBMY1D
NextProtP0C7P1 [Medical]
TSGene378949
GENETestsRBMY1D
Huge Navigator RBMY1D [HugePedia]
snp3D : Map Gene to Disease378949
BioCentury BCIQRBMY1D
ClinGenRBMY1D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD378949
Chemical/Pharm GKB GenePA134863616
Clinical trialRBMY1D
Miscellaneous
canSAR (ICR)RBMY1D (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBMY1D
EVEXRBMY1D
GoPubMedRBMY1D
iHOPRBMY1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:45 CET 2017

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