Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RBMY1E (RNA binding motif protein, Y-linked, family 1, member E)

Identity

Other alias-
HGNC (Hugo) RBMY1E
LocusID (NCBI) 378950
Atlas_Id 72543
Location Yq11.223  [Link to chromosome band Yq11]
Location_base_pair Starts at 21511378 and ends at 21525786 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBMY1E   23916
Cards
Entrez_Gene (NCBI)RBMY1E  378950  RNA binding motif protein, Y-linked, family 1, member E
Aliases
GeneCards (Weizmann)RBMY1E
Ensembl hg19 (Hinxton)ENSG00000242389 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000242389 [Gene_View]  chrY:21511378-21525786 [Contig_View]  RBMY1E [Vega]
ICGC DataPortalENSG00000242389
TCGA cBioPortalRBMY1E
AceView (NCBI)RBMY1E
Genatlas (Paris)RBMY1E
WikiGenes378950
SOURCE (Princeton)RBMY1E
Genetics Home Reference (NIH)RBMY1E
Genomic and cartography
GoldenPath hg38 (UCSC)RBMY1E  -     chrY:21511378-21525786 +  Yq11.223   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBMY1E  -     Yq11.223   [Description]    (hg19-Feb_2009)
EnsemblRBMY1E - Yq11.223 [CytoView hg19]  RBMY1E - Yq11.223 [CytoView hg38]
Mapping of homologs : NCBIRBMY1E [Mapview hg19]  RBMY1E [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC160023
RefSeq transcript (Entrez)NM_001006118
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBMY1E
Cluster EST : UnigeneHs.725744 [ NCBI ]
CGAP (NCI)Hs.725744
Alternative Splicing GalleryENSG00000242389
Gene ExpressionRBMY1E [ NCBI-GEO ]   RBMY1E [ EBI - ARRAY_EXPRESS ]   RBMY1E [ SEEK ]   RBMY1E [ MEM ]
Gene Expression Viewer (FireBrowse)RBMY1E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)378950
GTEX Portal (Tissue expression)RBMY1E
Human Protein AtlasENSG00000242389-RBMY1E [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NEQ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NEQ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NEQ0
Splice isoforms : SwissVarA6NEQ0
PhosPhoSitePlusA6NEQ0
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RBM1CTR    RRM_dom   
Domain families : Pfam (Sanger)RBM1CTR (PF08081)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam08081    pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBMY1E
DMDM Disease mutations378950
Blocks (Seattle)RBMY1E
SuperfamilyA6NEQ0
Human Protein Atlas [tissue]ENSG00000242389-RBMY1E [tissue]
Peptide AtlasA6NEQ0
HPRD17960
IPIIPI00472030   IPI01010131   
Protein Interaction databases
DIP (DOE-UCLA)A6NEQ0
IntAct (EBI)A6NEQ0
FunCoupENSG00000242389
BioGRIDRBMY1E
STRING (EMBL)RBMY1E
ZODIACRBMY1E
Ontologies - Pathways
QuickGOA6NEQ0
Ontology : AmiGORNA binding  nucleus  mRNA processing  RNA splicing  
Ontology : EGO-EBIRNA binding  nucleus  mRNA processing  RNA splicing  
NDEx NetworkRBMY1E
Atlas of Cancer Signalling NetworkRBMY1E
Wikipedia pathwaysRBMY1E
Orthology - Evolution
OrthoDB378950
GeneTree (enSembl)ENSG00000242389
Phylogenetic Trees/Animal Genes : TreeFamRBMY1E
HOVERGENA6NEQ0
HOGENOMA6NEQ0
Homologs : HomoloGeneRBMY1E
Homology/Alignments : Family Browser (UCSC)RBMY1E
Gene fusions - Rearrangements
Tumor Fusion PortalRBMY1E
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBMY1E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBMY1E
dbVarRBMY1E
ClinVarRBMY1E
1000_GenomesRBMY1E 
Exome Variant ServerRBMY1E
ExAC (Exome Aggregation Consortium)ENSG00000242389
GNOMAD BrowserENSG00000242389
Genetic variants : HAPMAP378950
Genomic Variants (DGV)RBMY1E [DGVbeta]
DECIPHERRBMY1E [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBMY1E 
Mutations
ICGC Data PortalRBMY1E 
TCGA Data PortalRBMY1E 
Broad Tumor PortalRBMY1E
OASIS PortalRBMY1E [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBMY1E  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBMY1E
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBMY1E
DgiDB (Drug Gene Interaction Database)RBMY1E
DoCM (Curated mutations)RBMY1E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBMY1E (select a term)
intoGenRBMY1E
Cancer3DRBMY1E(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRBMY1E
MedgenRBMY1E
Genetic Testing Registry RBMY1E
NextProtA6NEQ0 [Medical]
TSGene378950
GENETestsRBMY1E
Target ValidationRBMY1E
Huge Navigator RBMY1E [HugePedia]
snp3D : Map Gene to Disease378950
BioCentury BCIQRBMY1E
ClinGenRBMY1E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD378950
Chemical/Pharm GKB GenePA134905273
Clinical trialRBMY1E
Miscellaneous
canSAR (ICR)RBMY1E (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBMY1E
EVEXRBMY1E
GoPubMedRBMY1E
iHOPRBMY1E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:01:09 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.