Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RBMY1F (RNA binding motif protein, Y-linked, family 1, member F)

Identity

Alias_symbol (synonym)MGC33094
Other aliasYRRM2
HGNC (Hugo) RBMY1F
LocusID (NCBI) 159163
Atlas_Id 72544
Location Yq11.223  [Link to chromosome band Yq11]
Location_base_pair Starts at 22168542 and ends at 22182942 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBMY1F   23974
Cards
Entrez_Gene (NCBI)RBMY1F  159163  RNA binding motif protein, Y-linked, family 1, member F
AliasesYRRM2
GeneCards (Weizmann)RBMY1F
Ensembl hg19 (Hinxton)ENSG00000169800 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169800 [Gene_View]  chrY:22168542-22182942 [Contig_View]  RBMY1F [Vega]
ICGC DataPortalENSG00000169800
TCGA cBioPortalRBMY1F
AceView (NCBI)RBMY1F
Genatlas (Paris)RBMY1F
WikiGenes159163
SOURCE (Princeton)RBMY1F
Genetics Home Reference (NIH)RBMY1F
Genomic and cartography
GoldenPath hg38 (UCSC)RBMY1F  -     chrY:22168542-22182942 -  Yq11.223   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBMY1F  -     Yq11.223   [Description]    (hg19-Feb_2009)
EnsemblRBMY1F - Yq11.223 [CytoView hg19]  RBMY1F - Yq11.223 [CytoView hg38]
Mapping of homologs : NCBIRBMY1F [Mapview hg19]  RBMY1F [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC030018 DQ891199 X76060
RefSeq transcript (Entrez)NM_001303410 NM_152585
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBMY1F
Cluster EST : UnigeneHs.567746 [ NCBI ]
CGAP (NCI)Hs.567746
Alternative Splicing GalleryENSG00000169800
Gene ExpressionRBMY1F [ NCBI-GEO ]   RBMY1F [ EBI - ARRAY_EXPRESS ]   RBMY1F [ SEEK ]   RBMY1F [ MEM ]
Gene Expression Viewer (FireBrowse)RBMY1F [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)159163
GTEX Portal (Tissue expression)RBMY1F
Human Protein AtlasENSG00000169800-RBMY1F [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15415   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15415  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15415
Splice isoforms : SwissVarQ15415
PhosPhoSitePlusQ15415
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RBM1CTR    RRM_dom   
Domain families : Pfam (Sanger)RBM1CTR (PF08081)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam08081    pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBMY1F
DMDM Disease mutations159163
Blocks (Seattle)RBMY1F
SuperfamilyQ15415
Human Protein Atlas [tissue]ENSG00000169800-RBMY1F [tissue]
Peptide AtlasQ15415
HPRD15232
Protein Interaction databases
DIP (DOE-UCLA)Q15415
IntAct (EBI)Q15415
FunCoupENSG00000169800
BioGRIDRBMY1F
STRING (EMBL)RBMY1F
ZODIACRBMY1F
Ontologies - Pathways
QuickGOQ15415
Ontology : AmiGORNA binding  protein binding  cellular_component  nucleus  mRNA processing  spermatogenesis  RNA splicing  identical protein binding  
Ontology : EGO-EBIRNA binding  protein binding  cellular_component  nucleus  mRNA processing  spermatogenesis  RNA splicing  identical protein binding  
NDEx NetworkRBMY1F
Atlas of Cancer Signalling NetworkRBMY1F
Wikipedia pathwaysRBMY1F
Orthology - Evolution
OrthoDB159163
GeneTree (enSembl)ENSG00000169800
Phylogenetic Trees/Animal Genes : TreeFamRBMY1F
HOVERGENQ15415
HOGENOMQ15415
Homologs : HomoloGeneRBMY1F
Homology/Alignments : Family Browser (UCSC)RBMY1F
Gene fusions - Rearrangements
Tumor Fusion PortalRBMY1F
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBMY1F [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBMY1F
dbVarRBMY1F
ClinVarRBMY1F
1000_GenomesRBMY1F 
Exome Variant ServerRBMY1F
ExAC (Exome Aggregation Consortium)ENSG00000169800
GNOMAD BrowserENSG00000169800
Genetic variants : HAPMAP159163
Genomic Variants (DGV)RBMY1F [DGVbeta]
DECIPHERRBMY1F [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBMY1F 
Mutations
ICGC Data PortalRBMY1F 
TCGA Data PortalRBMY1F 
Broad Tumor PortalRBMY1F
OASIS PortalRBMY1F [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBMY1F  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBMY1F
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBMY1F
DgiDB (Drug Gene Interaction Database)RBMY1F
DoCM (Curated mutations)RBMY1F (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBMY1F (select a term)
intoGenRBMY1F
Cancer3DRBMY1F(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRBMY1F
MedgenRBMY1F
Genetic Testing Registry RBMY1F
NextProtQ15415 [Medical]
TSGene159163
GENETestsRBMY1F
Target ValidationRBMY1F
Huge Navigator RBMY1F [HugePedia]
snp3D : Map Gene to Disease159163
BioCentury BCIQRBMY1F
ClinGenRBMY1F
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD159163
Chemical/Pharm GKB GenePA134991920
Clinical trialRBMY1F
Miscellaneous
canSAR (ICR)RBMY1F (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBMY1F
EVEXRBMY1F
GoPubMedRBMY1F
iHOPRBMY1F
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:01:10 CET 2017

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