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RBMY1J (RNA binding motif protein, Y-linked, family 1, member J)

Identity

Other alias-
HGNC (Hugo) RBMY1J
LocusID (NCBI) 378951
Atlas_Id 72545
Location Yq11.223  [Link to chromosome band Yq11]
Location_base_pair Starts at 24549623 and ends at 24564028 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBMY1J   23917
Cards
Entrez_Gene (NCBI)RBMY1J  378951  RNA binding motif protein, Y-linked, family 1, member J
Aliases
GeneCards (Weizmann)RBMY1J
Ensembl hg19 (Hinxton)ENSG00000226941 [Gene_View]  chrY:24549623-24564028 [Contig_View]  RBMY1J [Vega]
Ensembl hg38 (Hinxton)ENSG00000226941 [Gene_View]  chrY:24549623-24564028 [Contig_View]  RBMY1J [Vega]
ICGC DataPortalENSG00000226941
TCGA cBioPortalRBMY1J
AceView (NCBI)RBMY1J
Genatlas (Paris)RBMY1J
WikiGenes378951
SOURCE (Princeton)RBMY1J
Genetics Home Reference (NIH)RBMY1J
Genomic and cartography
GoldenPath hg19 (UCSC)RBMY1J  -     chrY:24549623-24564028 +  Yq11.223   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBMY1J  -     Yq11.223   [Description]    (hg38-Dec_2013)
EnsemblRBMY1J - Yq11.223 [CytoView hg19]  RBMY1J - Yq11.223 [CytoView hg38]
Mapping of homologs : NCBIRBMY1J [Mapview hg19]  RBMY1J [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK313597 BC148576 DQ894382
RefSeq transcript (Entrez)NM_001006117
RefSeq genomic (Entrez)NC_000024 NG_004755 NT_011903
Consensus coding sequences : CCDS (NCBI)RBMY1J
Cluster EST : UnigeneHs.567746 [ NCBI ]
CGAP (NCI)Hs.567746
Alternative Splicing GalleryENSG00000226941
Gene ExpressionRBMY1J [ NCBI-GEO ]   RBMY1J [ EBI - ARRAY_EXPRESS ]   RBMY1J [ SEEK ]   RBMY1J [ MEM ]
Gene Expression Viewer (FireBrowse)RBMY1J [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)378951
GTEX Portal (Tissue expression)RBMY1J
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15415   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15415  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15415
Splice isoforms : SwissVarQ15415
PhosPhoSitePlusQ15415
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RBM1CTR    RRM_dom   
Domain families : Pfam (Sanger)RBM1CTR (PF08081)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam08081    pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBMY1J
DMDM Disease mutations378951
Blocks (Seattle)RBMY1J
SuperfamilyQ15415
Human Protein AtlasENSG00000226941
Peptide AtlasQ15415
HPRD15233
Protein Interaction databases
DIP (DOE-UCLA)Q15415
IntAct (EBI)Q15415
FunCoupENSG00000226941
BioGRIDRBMY1J
STRING (EMBL)RBMY1J
ZODIACRBMY1J
Ontologies - Pathways
QuickGOQ15415
Ontology : AmiGOnucleotide binding  RNA binding  protein binding  cellular_component  nucleus  mRNA processing  spermatogenesis  RNA splicing  
Ontology : EGO-EBInucleotide binding  RNA binding  protein binding  cellular_component  nucleus  mRNA processing  spermatogenesis  RNA splicing  
NDEx NetworkRBMY1J
Atlas of Cancer Signalling NetworkRBMY1J
Wikipedia pathwaysRBMY1J
Orthology - Evolution
OrthoDB378951
GeneTree (enSembl)ENSG00000226941
Phylogenetic Trees/Animal Genes : TreeFamRBMY1J
HOVERGENQ15415
HOGENOMQ15415
Homologs : HomoloGeneRBMY1J
Homology/Alignments : Family Browser (UCSC)RBMY1J
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBMY1J [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBMY1J
dbVarRBMY1J
ClinVarRBMY1J
1000_GenomesRBMY1J 
Exome Variant ServerRBMY1J
ExAC (Exome Aggregation Consortium)RBMY1J (select the gene name)
Genetic variants : HAPMAP378951
Genomic Variants (DGV)RBMY1J [DGVbeta]
DECIPHER (Syndromes)Y:24549623-24564028  ENSG00000226941
CONAN: Copy Number AnalysisRBMY1J 
Mutations
ICGC Data PortalRBMY1J 
TCGA Data PortalRBMY1J 
Broad Tumor PortalRBMY1J
OASIS PortalRBMY1J [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBMY1J  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBMY1J
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBMY1J
DgiDB (Drug Gene Interaction Database)RBMY1J
DoCM (Curated mutations)RBMY1J (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBMY1J (select a term)
intoGenRBMY1J
Cancer3DRBMY1J(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRBMY1J
Genetic Testing Registry RBMY1J
NextProtQ15415 [Medical]
TSGene378951
GENETestsRBMY1J
Huge Navigator RBMY1J [HugePedia]
snp3D : Map Gene to Disease378951
BioCentury BCIQRBMY1J
ClinGenRBMY1J
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD378951
Chemical/Pharm GKB GenePA134946298
Clinical trialRBMY1J
Miscellaneous
canSAR (ICR)RBMY1J (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBMY1J
EVEXRBMY1J
GoPubMedRBMY1J
iHOPRBMY1J
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:45 CET 2017

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