Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RBP1 (retinol binding protein 1)

Identity

Alias_namesretinol-binding protein 1
Alias_symbol (synonym)CRABP-I
CRBP1
CRBP
RBPC
CRBPI
Other alias
HGNC (Hugo) RBP1
LocusID (NCBI) 5947
Atlas_Id 42074
Location 3q23  [Link to chromosome band 3q23]
Location_base_pair Starts at 139526405 and ends at 139539829 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBP1   9919
Cards
Entrez_Gene (NCBI)RBP1  5947  retinol binding protein 1
AliasesCRABP-I; CRBP; CRBP1; CRBPI; 
RBPC
GeneCards (Weizmann)RBP1
Ensembl hg19 (Hinxton)ENSG00000114115 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114115 [Gene_View]  chr3:139526405-139539829 [Contig_View]  RBP1 [Vega]
ICGC DataPortalENSG00000114115
TCGA cBioPortalRBP1
AceView (NCBI)RBP1
Genatlas (Paris)RBP1
WikiGenes5947
SOURCE (Princeton)RBP1
Genetics Home Reference (NIH)RBP1
Genomic and cartography
GoldenPath hg38 (UCSC)RBP1  -     chr3:139526405-139539829 -  3q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBP1  -     3q23   [Description]    (hg19-Feb_2009)
EnsemblRBP1 - 3q23 [CytoView hg19]  RBP1 - 3q23 [CytoView hg38]
Mapping of homologs : NCBIRBP1 [Mapview hg19]  RBP1 [Mapview hg38]
OMIM180260   
Gene and transcription
Genbank (Entrez)AK290315 AK301684 AK307378 AK309492 BC121052
RefSeq transcript (Entrez)NM_001130992 NM_001130993 NM_002899
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBP1
Cluster EST : UnigeneHs.529571 [ NCBI ]
CGAP (NCI)Hs.529571
Alternative Splicing GalleryENSG00000114115
Gene ExpressionRBP1 [ NCBI-GEO ]   RBP1 [ EBI - ARRAY_EXPRESS ]   RBP1 [ SEEK ]   RBP1 [ MEM ]
Gene Expression Viewer (FireBrowse)RBP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5947
GTEX Portal (Tissue expression)RBP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09455   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP09455  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP09455
Splice isoforms : SwissVarP09455
PhosPhoSitePlusP09455
Domaine pattern : Prosite (Expaxy)FABP (PS00214)   
Domains : Interpro (EBI)Calycin    Calycin-like    CRBP1    Fatty_acid-bd    iLBP    Lipocln_cytosolic_FA-bd_dom   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)RBP1
DMDM Disease mutations5947
Blocks (Seattle)RBP1
PDB (SRS)5H8T    5H9A    5HA1    5HBS    5LJB    5LJC    5LJD    5LJE    5LJG    5LJH    5LJK   
PDB (PDBSum)5H8T    5H9A    5HA1    5HBS    5LJB    5LJC    5LJD    5LJE    5LJG    5LJH    5LJK   
PDB (IMB)5H8T    5H9A    5HA1    5HBS    5LJB    5LJC    5LJD    5LJE    5LJG    5LJH    5LJK   
PDB (RSDB)5H8T    5H9A    5HA1    5HBS    5LJB    5LJC    5LJD    5LJE    5LJG    5LJH    5LJK   
Structural Biology KnowledgeBase5H8T    5H9A    5HA1    5HBS    5LJB    5LJC    5LJD    5LJE    5LJG    5LJH    5LJK   
SCOP (Structural Classification of Proteins)5H8T    5H9A    5HA1    5HBS    5LJB    5LJC    5LJD    5LJE    5LJG    5LJH    5LJK   
CATH (Classification of proteins structures)5H8T    5H9A    5HA1    5HBS    5LJB    5LJC    5LJD    5LJE    5LJG    5LJH    5LJK   
SuperfamilyP09455
Human Protein AtlasENSG00000114115
Peptide AtlasP09455
HPRD07036
IPIIPI00219718   IPI00791403   IPI00966782   IPI00969062   
Protein Interaction databases
DIP (DOE-UCLA)P09455
IntAct (EBI)P09455
FunCoupENSG00000114115
BioGRIDRBP1
STRING (EMBL)RBP1
ZODIACRBP1
Ontologies - Pathways
QuickGOP09455
Ontology : AmiGOretinoid metabolic process  retinoic acid biosynthetic process  transporter activity  retinoid binding  nucleoplasm  cytosol  cytosol  vitamin A metabolic process  transport  retinal binding  retinol binding  
Ontology : EGO-EBIretinoid metabolic process  retinoic acid biosynthetic process  transporter activity  retinoid binding  nucleoplasm  cytosol  cytosol  vitamin A metabolic process  transport  retinal binding  retinol binding  
NDEx NetworkRBP1
Atlas of Cancer Signalling NetworkRBP1
Wikipedia pathwaysRBP1
Orthology - Evolution
OrthoDB5947
GeneTree (enSembl)ENSG00000114115
Phylogenetic Trees/Animal Genes : TreeFamRBP1
HOVERGENP09455
HOGENOMP09455
Homologs : HomoloGeneRBP1
Homology/Alignments : Family Browser (UCSC)RBP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBP1
dbVarRBP1
ClinVarRBP1
1000_GenomesRBP1 
Exome Variant ServerRBP1
ExAC (Exome Aggregation Consortium)RBP1 (select the gene name)
Genetic variants : HAPMAP5947
Genomic Variants (DGV)RBP1 [DGVbeta]
DECIPHERRBP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBP1 
Mutations
ICGC Data PortalRBP1 
TCGA Data PortalRBP1 
Broad Tumor PortalRBP1
OASIS PortalRBP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBP1
DgiDB (Drug Gene Interaction Database)RBP1
DoCM (Curated mutations)RBP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBP1 (select a term)
intoGenRBP1
Cancer3DRBP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180260   
Orphanet
MedgenRBP1
Genetic Testing Registry RBP1
NextProtP09455 [Medical]
TSGene5947
GENETestsRBP1
Huge Navigator RBP1 [HugePedia]
snp3D : Map Gene to Disease5947
BioCentury BCIQRBP1
ClinGenRBP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5947
Chemical/Pharm GKB GenePA34286
Clinical trialRBP1
Miscellaneous
canSAR (ICR)RBP1 (select the gene name)
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBP1
EVEXRBP1
GoPubMedRBP1
iHOPRBP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:34:31 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.