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RBP2 (retinol binding protein 2)

Identity

Alias_namesretinol-binding protein 2
Alias_symbol (synonym)CRBP2
RBPC2
CRBPII
CRABP-II
Other alias
HGNC (Hugo) RBP2
LocusID (NCBI) 5948
Atlas_Id 51437
Location 3q23  [Link to chromosome band 3q23]
Location_base_pair Starts at 139452884 and ends at 139476510 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBP2   9920
Cards
Entrez_Gene (NCBI)RBP2  5948  retinol binding protein 2
AliasesCRABP-II; CRBP2; CRBPII; RBPC2
GeneCards (Weizmann)RBP2
Ensembl hg19 (Hinxton)ENSG00000114113 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114113 [Gene_View]  chr3:139452884-139476510 [Contig_View]  RBP2 [Vega]
ICGC DataPortalENSG00000114113
TCGA cBioPortalRBP2
AceView (NCBI)RBP2
Genatlas (Paris)RBP2
WikiGenes5948
SOURCE (Princeton)RBP2
Genetics Home Reference (NIH)RBP2
Genomic and cartography
GoldenPath hg38 (UCSC)RBP2  -     chr3:139452884-139476510 -  3q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBP2  -     3q23   [Description]    (hg19-Feb_2009)
EnsemblRBP2 - 3q23 [CytoView hg19]  RBP2 - 3q23 [CytoView hg38]
Mapping of homologs : NCBIRBP2 [Mapview hg19]  RBP2 [Mapview hg38]
OMIM180280   
Gene and transcription
Genbank (Entrez)AI076320 AK291978 AW772327 BC069296 BC069361
RefSeq transcript (Entrez)NM_004164
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBP2
Cluster EST : UnigeneHs.655516 [ NCBI ]
CGAP (NCI)Hs.655516
Alternative Splicing GalleryENSG00000114113
Gene ExpressionRBP2 [ NCBI-GEO ]   RBP2 [ EBI - ARRAY_EXPRESS ]   RBP2 [ SEEK ]   RBP2 [ MEM ]
Gene Expression Viewer (FireBrowse)RBP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5948
GTEX Portal (Tissue expression)RBP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP50120   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP50120  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP50120
Splice isoforms : SwissVarP50120
PhosPhoSitePlusP50120
Domaine pattern : Prosite (Expaxy)FABP (PS00214)   
Domains : Interpro (EBI)Calycin    Calycin-like    CRBP-II    Fatty_acid-bd    iLBP    Lipocln_cytosolic_FA-bd_dom   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)RBP2
DMDM Disease mutations5948
Blocks (Seattle)RBP2
PDB (SRS)2RCQ    2RCT    4EDE    4EEJ    4EFG    4EXZ    4GKC    4QYN    4QYP    4QZT    4QZU    4RUU    4ZCB    4ZGU    4ZH6    4ZH9    4ZJ0    4ZR2    5DG4    5DPQ    5F58    5F6B    5F7G    5FAZ    5FEN    5FFH   
PDB (PDBSum)2RCQ    2RCT    4EDE    4EEJ    4EFG    4EXZ    4GKC    4QYN    4QYP    4QZT    4QZU    4RUU    4ZCB    4ZGU    4ZH6    4ZH9    4ZJ0    4ZR2    5DG4    5DPQ    5F58    5F6B    5F7G    5FAZ    5FEN    5FFH   
PDB (IMB)2RCQ    2RCT    4EDE    4EEJ    4EFG    4EXZ    4GKC    4QYN    4QYP    4QZT    4QZU    4RUU    4ZCB    4ZGU    4ZH6    4ZH9    4ZJ0    4ZR2    5DG4    5DPQ    5F58    5F6B    5F7G    5FAZ    5FEN    5FFH   
PDB (RSDB)2RCQ    2RCT    4EDE    4EEJ    4EFG    4EXZ    4GKC    4QYN    4QYP    4QZT    4QZU    4RUU    4ZCB    4ZGU    4ZH6    4ZH9    4ZJ0    4ZR2    5DG4    5DPQ    5F58    5F6B    5F7G    5FAZ    5FEN    5FFH   
Structural Biology KnowledgeBase2RCQ    2RCT    4EDE    4EEJ    4EFG    4EXZ    4GKC    4QYN    4QYP    4QZT    4QZU    4RUU    4ZCB    4ZGU    4ZH6    4ZH9    4ZJ0    4ZR2    5DG4    5DPQ    5F58    5F6B    5F7G    5FAZ    5FEN    5FFH   
SCOP (Structural Classification of Proteins)2RCQ    2RCT    4EDE    4EEJ    4EFG    4EXZ    4GKC    4QYN    4QYP    4QZT    4QZU    4RUU    4ZCB    4ZGU    4ZH6    4ZH9    4ZJ0    4ZR2    5DG4    5DPQ    5F58    5F6B    5F7G    5FAZ    5FEN    5FFH   
CATH (Classification of proteins structures)2RCQ    2RCT    4EDE    4EEJ    4EFG    4EXZ    4GKC    4QYN    4QYP    4QZT    4QZU    4RUU    4ZCB    4ZGU    4ZH6    4ZH9    4ZJ0    4ZR2    5DG4    5DPQ    5F58    5F6B    5F7G    5FAZ    5FEN    5FFH   
SuperfamilyP50120
Human Protein AtlasENSG00000114113
Peptide AtlasP50120
HPRD07184
IPIIPI00419986   IPI00966409   IPI00967430   
Protein Interaction databases
DIP (DOE-UCLA)P50120
IntAct (EBI)P50120
FunCoupENSG00000114113
BioGRIDRBP2
STRING (EMBL)RBP2
ZODIACRBP2
Ontologies - Pathways
QuickGOP50120
Ontology : AmiGOretinoid metabolic process  transporter activity  retinoid binding  cytosol  vitamin A metabolic process  transport  epidermis development  retinal binding  retinol binding  
Ontology : EGO-EBIretinoid metabolic process  transporter activity  retinoid binding  cytosol  vitamin A metabolic process  transport  epidermis development  retinal binding  retinol binding  
Pathways : KEGGVitamin digestion and absorption   
NDEx NetworkRBP2
Atlas of Cancer Signalling NetworkRBP2
Wikipedia pathwaysRBP2
Orthology - Evolution
OrthoDB5948
GeneTree (enSembl)ENSG00000114113
Phylogenetic Trees/Animal Genes : TreeFamRBP2
HOVERGENP50120
HOGENOMP50120
Homologs : HomoloGeneRBP2
Homology/Alignments : Family Browser (UCSC)RBP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBP2
dbVarRBP2
ClinVarRBP2
1000_GenomesRBP2 
Exome Variant ServerRBP2
ExAC (Exome Aggregation Consortium)RBP2 (select the gene name)
Genetic variants : HAPMAP5948
Genomic Variants (DGV)RBP2 [DGVbeta]
DECIPHERRBP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBP2 
Mutations
ICGC Data PortalRBP2 
TCGA Data PortalRBP2 
Broad Tumor PortalRBP2
OASIS PortalRBP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBP2
DgiDB (Drug Gene Interaction Database)RBP2
DoCM (Curated mutations)RBP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBP2 (select a term)
intoGenRBP2
Cancer3DRBP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180280   
Orphanet
MedgenRBP2
Genetic Testing Registry RBP2
NextProtP50120 [Medical]
TSGene5948
GENETestsRBP2
Target ValidationRBP2
Huge Navigator RBP2 [HugePedia]
snp3D : Map Gene to Disease5948
BioCentury BCIQRBP2
ClinGenRBP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5948
Chemical/Pharm GKB GenePA34287
Clinical trialRBP2
Miscellaneous
canSAR (ICR)RBP2 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBP2
EVEXRBP2
GoPubMedRBP2
iHOPRBP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:12:44 CEST 2017

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