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RBP3 (retinol binding protein 3)

Identity

Alias_namesretinol-binding protein 3, interstitial
Alias_symbol (synonym)D10S64
D10S65
D10S66
RP66
Other aliasIRBP
RBPI
HGNC (Hugo) RBP3
LocusID (NCBI) 5949
Atlas_Id 72549
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 47348371 and ends at 47357875 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBP3   9921
Cards
Entrez_Gene (NCBI)RBP3  5949  retinol binding protein 3
AliasesD10S64; D10S65; D10S66; IRBP; 
RBPI; RP66
GeneCards (Weizmann)RBP3
Ensembl hg19 (Hinxton)ENSG00000265203 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000265203 [Gene_View]  chr10:47348371-47357875 [Contig_View]  RBP3 [Vega]
ICGC DataPortalENSG00000265203
TCGA cBioPortalRBP3
AceView (NCBI)RBP3
Genatlas (Paris)RBP3
WikiGenes5949
SOURCE (Princeton)RBP3
Genetics Home Reference (NIH)RBP3
Genomic and cartography
GoldenPath hg38 (UCSC)RBP3  -     chr10:47348371-47357875 +  10q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBP3  -     10q11.22   [Description]    (hg19-Feb_2009)
EnsemblRBP3 - 10q11.22 [CytoView hg19]  RBP3 - 10q11.22 [CytoView hg38]
Mapping of homologs : NCBIRBP3 [Mapview hg19]  RBP3 [Mapview hg38]
OMIM180290   268000   615233   
Gene and transcription
Genbank (Entrez)AB593121 BC039844 DQ426897 J03912 M22453
RefSeq transcript (Entrez)NM_002900
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBP3
Cluster EST : UnigeneHs.591928 [ NCBI ]
CGAP (NCI)Hs.591928
Alternative Splicing GalleryENSG00000265203
Gene ExpressionRBP3 [ NCBI-GEO ]   RBP3 [ EBI - ARRAY_EXPRESS ]   RBP3 [ SEEK ]   RBP3 [ MEM ]
Gene Expression Viewer (FireBrowse)RBP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5949
GTEX Portal (Tissue expression)RBP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP10745   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP10745  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP10745
Splice isoforms : SwissVarP10745
PhosPhoSitePlusP10745
Domains : Interpro (EBI)ClpP/crotonase-like_dom    RBP3    Tail-specific_protease   
Domain families : Pfam (Sanger)Peptidase_S41 (PF03572)   
Domain families : Pfam (NCBI)pfam03572   
Domain families : Smart (EMBL)TSPc (SM00245)  
Conserved Domain (NCBI)RBP3
DMDM Disease mutations5949
Blocks (Seattle)RBP3
SuperfamilyP10745
Human Protein AtlasENSG00000265203
Peptide AtlasP10745
HPRD01581
IPIIPI00022337   
Protein Interaction databases
DIP (DOE-UCLA)P10745
IntAct (EBI)P10745
FunCoupENSG00000265203
BioGRIDRBP3
STRING (EMBL)RBP3
ZODIACRBP3
Ontologies - Pathways
QuickGOP10745
Ontology : AmiGOretinoid metabolic process  retinoid binding  extracellular region  extracellular space  proteolysis  lipid metabolic process  transport  visual perception  serine-type peptidase activity  retinal binding  retinol binding  interphotoreceptor matrix  extracellular vesicle  
Ontology : EGO-EBIretinoid metabolic process  retinoid binding  extracellular region  extracellular space  proteolysis  lipid metabolic process  transport  visual perception  serine-type peptidase activity  retinal binding  retinol binding  interphotoreceptor matrix  extracellular vesicle  
NDEx NetworkRBP3
Atlas of Cancer Signalling NetworkRBP3
Wikipedia pathwaysRBP3
Orthology - Evolution
OrthoDB5949
GeneTree (enSembl)ENSG00000265203
Phylogenetic Trees/Animal Genes : TreeFamRBP3
HOVERGENP10745
HOGENOMP10745
Homologs : HomoloGeneRBP3
Homology/Alignments : Family Browser (UCSC)RBP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBP3
dbVarRBP3
ClinVarRBP3
1000_GenomesRBP3 
Exome Variant ServerRBP3
ExAC (Exome Aggregation Consortium)RBP3 (select the gene name)
Genetic variants : HAPMAP5949
Genomic Variants (DGV)RBP3 [DGVbeta]
DECIPHERRBP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBP3 
Mutations
ICGC Data PortalRBP3 
TCGA Data PortalRBP3 
Broad Tumor PortalRBP3
OASIS PortalRBP3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRBP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch RBP3
DgiDB (Drug Gene Interaction Database)RBP3
DoCM (Curated mutations)RBP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBP3 (select a term)
intoGenRBP3
Cancer3DRBP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180290    268000    615233   
Orphanet659   
MedgenRBP3
Genetic Testing Registry RBP3
NextProtP10745 [Medical]
TSGene5949
GENETestsRBP3
Target ValidationRBP3
Huge Navigator RBP3 [HugePedia]
snp3D : Map Gene to Disease5949
BioCentury BCIQRBP3
ClinGenRBP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5949
Chemical/Pharm GKB GenePA34288
Clinical trialRBP3
Miscellaneous
canSAR (ICR)RBP3 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBP3
EVEXRBP3
GoPubMedRBP3
iHOPRBP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:24 CEST 2017

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