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RBP3 (retinol binding protein 3)

Identity

Alias (NCBI)D10S64
D10S65
D10S66
IRBP
RBPI
RP66
HGNC (Hugo) RBP3
HGNC Alias symbD10S64
D10S65
D10S66
RP66
HGNC Alias nameinterstitial retinol-binding protein 3
HGNC Previous nameretinol-binding protein 3, interstitial
LocusID (NCBI) 5949
Atlas_Id 72549
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 47348363 and ends at 47357881 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RBP3   9921
Cards
Entrez_Gene (NCBI)RBP3    retinol binding protein 3
AliasesD10S64; D10S65; D10S66; IRBP; 
RBPI; RP66
GeneCards (Weizmann)RBP3
Ensembl hg19 (Hinxton)ENSG00000265203 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000265203 [Gene_View]  ENSG00000265203 [Sequence]  chr10:47348363-47357881 [Contig_View]  RBP3 [Vega]
ICGC DataPortalENSG00000265203
TCGA cBioPortalRBP3
AceView (NCBI)RBP3
Genatlas (Paris)RBP3
SOURCE (Princeton)RBP3
Genetics Home Reference (NIH)RBP3
Genomic and cartography
GoldenPath hg38 (UCSC)RBP3  -     chr10:47348363-47357881 +  10q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBP3  -     10q11.22   [Description]    (hg19-Feb_2009)
GoldenPathRBP3 - 10q11.22 [CytoView hg19]  RBP3 - 10q11.22 [CytoView hg38]
ImmunoBaseENSG00000265203
Genome Data Viewer NCBIRBP3 [Mapview hg19]  
OMIM180290   268000   615233   
Gene and transcription
Genbank (Entrez)AB593121 BC039844 DQ426897 J03912 M22453
RefSeq transcript (Entrez)NM_002900
Consensus coding sequences : CCDS (NCBI)RBP3
Gene ExpressionRBP3 [ NCBI-GEO ]   RBP3 [ EBI - ARRAY_EXPRESS ]   RBP3 [ SEEK ]   RBP3 [ MEM ]
Gene Expression Viewer (FireBrowse)RBP3 [ Firebrowse - Broad ]
GenevisibleExpression of RBP3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5949
GTEX Portal (Tissue expression)RBP3
Human Protein AtlasENSG00000265203-RBP3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP10745   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP10745  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP10745
PhosPhoSitePlusP10745
Domains : Interpro (EBI)ClpP/crotonase-like_dom_sf    Tail-specific_protease   
Domain families : Pfam (Sanger)Peptidase_S41 (PF03572)   
Domain families : Pfam (NCBI)pfam03572   
Domain families : Smart (EMBL)TSPc (SM00245)  
Conserved Domain (NCBI)RBP3
SuperfamilyP10745
AlphaFold pdb e-kbP10745   
Human Protein Atlas [tissue]ENSG00000265203-RBP3 [tissue]
HPRD01581
Protein Interaction databases
DIP (DOE-UCLA)P10745
IntAct (EBI)P10745
BioGRIDRBP3
STRING (EMBL)RBP3
ZODIACRBP3
Ontologies - Pathways
QuickGOP10745
Ontology : AmiGOretinoid metabolic process  retinoid binding  protein binding  extracellular region  extracellular space  proteolysis  lipid metabolic process  visual perception  serine-type peptidase activity  retinal binding  retinol binding  cone matrix sheath  extracellular vesicle  
Ontology : EGO-EBIretinoid metabolic process  retinoid binding  protein binding  extracellular region  extracellular space  proteolysis  lipid metabolic process  visual perception  serine-type peptidase activity  retinal binding  retinol binding  cone matrix sheath  extracellular vesicle  
NDEx NetworkRBP3
Atlas of Cancer Signalling NetworkRBP3
Wikipedia pathwaysRBP3
Orthology - Evolution
OrthoDB5949
GeneTree (enSembl)ENSG00000265203
Phylogenetic Trees/Animal Genes : TreeFamRBP3
Homologs : HomoloGeneRBP3
Homology/Alignments : Family Browser (UCSC)RBP3
Gene fusions - Rearrangements
Fusion : QuiverRBP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBP3
dbVarRBP3
ClinVarRBP3
MonarchRBP3
1000_GenomesRBP3 
Exome Variant ServerRBP3
GNOMAD BrowserENSG00000265203
Varsome BrowserRBP3
ACMGRBP3 variants
VarityP10745
Genomic Variants (DGV)RBP3 [DGVbeta]
DECIPHERRBP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBP3 
Mutations
ICGC Data PortalRBP3 
TCGA Data PortalRBP3 
Broad Tumor PortalRBP3
OASIS PortalRBP3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRBP3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRBP3
DgiDB (Drug Gene Interaction Database)RBP3
DoCM (Curated mutations)RBP3
CIViC (Clinical Interpretations of Variants in Cancer)RBP3
Cancer3DRBP3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180290    268000    615233   
Orphanet659   
DisGeNETRBP3
MedgenRBP3
Genetic Testing Registry RBP3
NextProtP10745 [Medical]
GENETestsRBP3
Target ValidationRBP3
Huge Navigator RBP3 [HugePedia]
ClinGenRBP3
Clinical trials, drugs, therapy
MyCancerGenomeRBP3
Protein Interactions : CTDRBP3
Pharm GKB GenePA34288
PharosP10745
Clinical trialRBP3
Miscellaneous
canSAR (ICR)RBP3
HarmonizomeRBP3
DataMed IndexRBP3
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRBP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:18:08 CEST 2021

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