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RBP4 (retinol binding protein 4)

Identity

Alias (NCBI)MCOPCB10
RDCCAS
HGNC (Hugo) RBP4
HGNC Previous nameretinol-binding protein 4, plasma
LocusID (NCBI) 5950
Atlas_Id 50989
Location 10q23.33  [Link to chromosome band 10q23]
Location_base_pair Starts at 93591694 and ends at 93601235 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HBG1 (11p15.4) / RBP4 (10q23.33)MYOF (10q23.33) / RBP4 (10q23.33)RBP4 (10q23.33) / ZDHHC17 (12q21.2)
SUCLG2 (3p14.1) / RBP4 (10q23.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RBP4   9922
Cards
Entrez_Gene (NCBI)RBP4    retinol binding protein 4
AliasesMCOPCB10; RDCCAS
GeneCards (Weizmann)RBP4
Ensembl hg19 (Hinxton)ENSG00000138207 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000138207 [Gene_View]  ENSG00000138207 [Sequence]  chr10:93591694-93601235 [Contig_View]  RBP4 [Vega]
ICGC DataPortalENSG00000138207
TCGA cBioPortalRBP4
AceView (NCBI)RBP4
Genatlas (Paris)RBP4
SOURCE (Princeton)RBP4
Genetics Home Reference (NIH)RBP4
Genomic and cartography
GoldenPath hg38 (UCSC)RBP4  -     chr10:93591694-93601235 -  10q23.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBP4  -     10q23.33   [Description]    (hg19-Feb_2009)
GoldenPathRBP4 - 10q23.33 [CytoView hg19]  RBP4 - 10q23.33 [CytoView hg38]
ImmunoBaseENSG00000138207
Genome Data Viewer NCBIRBP4 [Mapview hg19]  
OMIM180250   615147   616428   
Gene and transcription
Genbank (Entrez)BC020633 BG565176 BI712834 BX495987 X00129
RefSeq transcript (Entrez)NM_001323517 NM_001323518 NM_006744
Consensus coding sequences : CCDS (NCBI)RBP4
Gene ExpressionRBP4 [ NCBI-GEO ]   RBP4 [ EBI - ARRAY_EXPRESS ]   RBP4 [ SEEK ]   RBP4 [ MEM ]
Gene Expression Viewer (FireBrowse)RBP4 [ Firebrowse - Broad ]
GenevisibleExpression of RBP4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5950
GTEX Portal (Tissue expression)RBP4
Human Protein AtlasENSG00000138207-RBP4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP02753   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP02753  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP02753
PhosPhoSitePlusP02753
Domaine pattern : Prosite (Expaxy)LIPOCALIN (PS00213)   
Domains : Interpro (EBI)Calycin    Lipocalin_ApoD    Lipocalin_CS    Lipocln_cytosolic_FA-bd_dom    Retinol-bd/Purpurin   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)RBP4
PDB (RSDB)1BRP    1BRQ    1JYD    1JYJ    1QAB    1RBP    1RLB    2WQ9    2WQA    2WR6    3BSZ    3FMZ    4O9S    4PSQ    5NTY    5NU2    5NU6    5NU7    5NU8    5NU9    5NUA    5NUB    6QBA   
PDB Europe1BRP    1BRQ    1JYD    1JYJ    1QAB    1RBP    1RLB    2WQ9    2WQA    2WR6    3BSZ    3FMZ    4O9S    4PSQ    5NTY    5NU2    5NU6    5NU7    5NU8    5NU9    5NUA    5NUB    6QBA   
PDB (PDBSum)1BRP    1BRQ    1JYD    1JYJ    1QAB    1RBP    1RLB    2WQ9    2WQA    2WR6    3BSZ    3FMZ    4O9S    4PSQ    5NTY    5NU2    5NU6    5NU7    5NU8    5NU9    5NUA    5NUB    6QBA   
PDB (IMB)1BRP    1BRQ    1JYD    1JYJ    1QAB    1RBP    1RLB    2WQ9    2WQA    2WR6    3BSZ    3FMZ    4O9S    4PSQ    5NTY    5NU2    5NU6    5NU7    5NU8    5NU9    5NUA    5NUB    6QBA   
Structural Biology KnowledgeBase1BRP    1BRQ    1JYD    1JYJ    1QAB    1RBP    1RLB    2WQ9    2WQA    2WR6    3BSZ    3FMZ    4O9S    4PSQ    5NTY    5NU2    5NU6    5NU7    5NU8    5NU9    5NUA    5NUB    6QBA   
SCOP (Structural Classification of Proteins)1BRP    1BRQ    1JYD    1JYJ    1QAB    1RBP    1RLB    2WQ9    2WQA    2WR6    3BSZ    3FMZ    4O9S    4PSQ    5NTY    5NU2    5NU6    5NU7    5NU8    5NU9    5NUA    5NUB    6QBA   
CATH (Classification of proteins structures)1BRP    1BRQ    1JYD    1JYJ    1QAB    1RBP    1RLB    2WQ9    2WQA    2WR6    3BSZ    3FMZ    4O9S    4PSQ    5NTY    5NU2    5NU6    5NU7    5NU8    5NU9    5NUA    5NUB    6QBA   
SuperfamilyP02753
AlphaFold pdb e-kbP02753   
Human Protein Atlas [tissue]ENSG00000138207-RBP4 [tissue]
HPRD01580
Protein Interaction databases
DIP (DOE-UCLA)P02753
IntAct (EBI)P02753
BioGRIDRBP4
STRING (EMBL)RBP4
ZODIACRBP4
Ontologies - Pathways
QuickGOP02753
Ontology : AmiGOretinoid metabolic process  eye development  eye development  positive regulation of immunoglobulin production  protein binding  extracellular region  extracellular space  extracellular space  extracellular space  gluconeogenesis  gluconeogenesis  heart development  visual perception  retinal binding  retinol binding  retinol binding  maintenance of gastrointestinal epithelium  lung development  positive regulation of insulin secretion  response to retinoic acid  protein-containing complex  retinol transmembrane transporter activity  retinol transport  retinol transport  retinol metabolic process  glucose homeostasis  protein-containing complex binding  response to ethanol  embryonic organ morphogenesis  embryonic skeletal system development  cardiac muscle tissue development  female genitalia morphogenesis  negative regulation of cardiac muscle cell proliferation  embryonic retina morphogenesis in camera-type eye  uterus development  vagina development  urinary bladder development  heart trabecula formation  extracellular exosome  
Ontology : EGO-EBIretinoid metabolic process  eye development  eye development  positive regulation of immunoglobulin production  protein binding  extracellular region  extracellular space  extracellular space  extracellular space  gluconeogenesis  gluconeogenesis  heart development  visual perception  retinal binding  retinol binding  retinol binding  maintenance of gastrointestinal epithelium  lung development  positive regulation of insulin secretion  response to retinoic acid  protein-containing complex  retinol transmembrane transporter activity  retinol transport  retinol transport  retinol metabolic process  glucose homeostasis  protein-containing complex binding  response to ethanol  embryonic organ morphogenesis  embryonic skeletal system development  cardiac muscle tissue development  female genitalia morphogenesis  negative regulation of cardiac muscle cell proliferation  embryonic retina morphogenesis in camera-type eye  uterus development  vagina development  urinary bladder development  heart trabecula formation  extracellular exosome  
NDEx NetworkRBP4
Atlas of Cancer Signalling NetworkRBP4
Wikipedia pathwaysRBP4
Orthology - Evolution
OrthoDB5950
GeneTree (enSembl)ENSG00000138207
Phylogenetic Trees/Animal Genes : TreeFamRBP4
Homologs : HomoloGeneRBP4
Homology/Alignments : Family Browser (UCSC)RBP4
Gene fusions - Rearrangements
Fusion : QuiverRBP4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBP4
dbVarRBP4
ClinVarRBP4
MonarchRBP4
1000_GenomesRBP4 
Exome Variant ServerRBP4
GNOMAD BrowserENSG00000138207
Varsome BrowserRBP4
ACMGRBP4 variants
VarityP02753
Genomic Variants (DGV)RBP4 [DGVbeta]
DECIPHERRBP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBP4 
Mutations
ICGC Data PortalRBP4 
TCGA Data PortalRBP4 
Broad Tumor PortalRBP4
OASIS PortalRBP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBP4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRBP4
Mutations and Diseases : HGMDRBP4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRBP4
DgiDB (Drug Gene Interaction Database)RBP4
DoCM (Curated mutations)RBP4
CIViC (Clinical Interpretations of Variants in Cancer)RBP4
Cancer3DRBP4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180250    615147    616428   
Orphanet22106    13955   
DisGeNETRBP4
MedgenRBP4
Genetic Testing Registry RBP4
NextProtP02753 [Medical]
GENETestsRBP4
Target ValidationRBP4
Huge Navigator RBP4 [HugePedia]
ClinGenRBP4
Clinical trials, drugs, therapy
MyCancerGenomeRBP4
Protein Interactions : CTDRBP4
Pharm GKB GenePA34289
PharosP02753
Clinical trialRBP4
Miscellaneous
canSAR (ICR)RBP4
HarmonizomeRBP4
DataMed IndexRBP4
Probes
Litterature
PubMed350 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRBP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:28:31 CEST 2021

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