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RBP5 (retinol binding protein 5)

Identity

Alias_namesretinol-binding protein 5
Alias_symbol (synonym)CRBPIII
Other aliasCRBP-III
CRBP3
HRBPiso
HGNC (Hugo) RBP5
LocusID (NCBI) 83758
Atlas_Id 50066
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 7123681 and ends at 7130014 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RBP5 (12p13.31) / ENOX1 (13q14.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBP5   15847
Cards
Entrez_Gene (NCBI)RBP5  83758  retinol binding protein 5
AliasesCRBP-III; CRBP3; CRBPIII; HRBPiso
GeneCards (Weizmann)RBP5
Ensembl hg19 (Hinxton)ENSG00000139194 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139194 [Gene_View]  chr12:7123681-7130014 [Contig_View]  RBP5 [Vega]
ICGC DataPortalENSG00000139194
TCGA cBioPortalRBP5
AceView (NCBI)RBP5
Genatlas (Paris)RBP5
WikiGenes83758
SOURCE (Princeton)RBP5
Genetics Home Reference (NIH)RBP5
Genomic and cartography
GoldenPath hg38 (UCSC)RBP5  -     chr12:7123681-7130014 -  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBP5  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblRBP5 - 12p13.31 [CytoView hg19]  RBP5 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBIRBP5 [Mapview hg19]  RBP5 [Mapview hg38]
OMIM611866   
Gene and transcription
Genbank (Entrez)AA912830 AF212239 AK096947 AK223378 AK311977
RefSeq transcript (Entrez)NM_001329454 NM_031491
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBP5
Cluster EST : UnigeneHs.246046 [ NCBI ]
CGAP (NCI)Hs.246046
Alternative Splicing GalleryENSG00000139194
Gene ExpressionRBP5 [ NCBI-GEO ]   RBP5 [ EBI - ARRAY_EXPRESS ]   RBP5 [ SEEK ]   RBP5 [ MEM ]
Gene Expression Viewer (FireBrowse)RBP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83758
GTEX Portal (Tissue expression)RBP5
Human Protein AtlasENSG00000139194-RBP5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP82980   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP82980  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP82980
Splice isoforms : SwissVarP82980
PhosPhoSitePlusP82980
Domains : Interpro (EBI)Calycin    Calycin-like    CRBP-III    Fatty_acid-bd    iLBP    Lipocln_cytosolic_FA-bd_dom   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)RBP5
DMDM Disease mutations83758
Blocks (Seattle)RBP5
PDB (SRS)1GGL   
PDB (PDBSum)1GGL   
PDB (IMB)1GGL   
PDB (RSDB)1GGL   
Structural Biology KnowledgeBase1GGL   
SCOP (Structural Classification of Proteins)1GGL   
CATH (Classification of proteins structures)1GGL   
SuperfamilyP82980
Human Protein Atlas [tissue]ENSG00000139194-RBP5 [tissue]
Peptide AtlasP82980
HPRD17961
IPIIPI00219782   IPI01009211   IPI01014993   
Protein Interaction databases
DIP (DOE-UCLA)P82980
IntAct (EBI)P82980
FunCoupENSG00000139194
BioGRIDRBP5
STRING (EMBL)RBP5
ZODIACRBP5
Ontologies - Pathways
QuickGOP82980
Ontology : AmiGOtransporter activity  retinoid binding  protein binding  cytoplasm  transport  retinal binding  retinol binding  extracellular exosome  
Ontology : EGO-EBItransporter activity  retinoid binding  protein binding  cytoplasm  transport  retinal binding  retinol binding  extracellular exosome  
NDEx NetworkRBP5
Atlas of Cancer Signalling NetworkRBP5
Wikipedia pathwaysRBP5
Orthology - Evolution
OrthoDB83758
GeneTree (enSembl)ENSG00000139194
Phylogenetic Trees/Animal Genes : TreeFamRBP5
HOVERGENP82980
HOGENOMP82980
Homologs : HomoloGeneRBP5
Homology/Alignments : Family Browser (UCSC)RBP5
Gene fusions - Rearrangements
Fusion: Tumor Portal RBP5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBP5
dbVarRBP5
ClinVarRBP5
1000_GenomesRBP5 
Exome Variant ServerRBP5
ExAC (Exome Aggregation Consortium)ENSG00000139194
GNOMAD BrowserENSG00000139194
Genetic variants : HAPMAP83758
Genomic Variants (DGV)RBP5 [DGVbeta]
DECIPHERRBP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBP5 
Mutations
ICGC Data PortalRBP5 
TCGA Data PortalRBP5 
Broad Tumor PortalRBP5
OASIS PortalRBP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBP5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBP5
DgiDB (Drug Gene Interaction Database)RBP5
DoCM (Curated mutations)RBP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBP5 (select a term)
intoGenRBP5
Cancer3DRBP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611866   
Orphanet
MedgenRBP5
Genetic Testing Registry RBP5
NextProtP82980 [Medical]
TSGene83758
GENETestsRBP5
Target ValidationRBP5
Huge Navigator RBP5 [HugePedia]
snp3D : Map Gene to Disease83758
BioCentury BCIQRBP5
ClinGenRBP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83758
Chemical/Pharm GKB GenePA164742366
Clinical trialRBP5
Miscellaneous
canSAR (ICR)RBP5 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBP5
EVEXRBP5
GoPubMedRBP5
iHOPRBP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:08:17 CET 2017

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