Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RBP7 (retinol binding protein 7, cellular)

Identity

Alias_namesretinol binding protein 7, cellular
Alias_symbol (synonym)CRBPIV
Other aliasCRBP4
HGNC (Hugo) RBP7
LocusID (NCBI) 116362
Atlas_Id 72550
Location 1p36.22  [Link to chromosome band 1p36]
Location_base_pair Starts at 10057255 and ends at 10076078 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KIRREL (1q23.1) / RBP7 (1p36.22)RBP7 (1p36.22) / MS4A7 (11q12.2)UBE4B (1p36.22) / RBP7 (1p36.22)
KIRREL RBP7UBE4B RBP7

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBP7   30316
Cards
Entrez_Gene (NCBI)RBP7  116362  retinol binding protein 7, cellular
AliasesCRBP4; CRBPIV
GeneCards (Weizmann)RBP7
Ensembl hg19 (Hinxton)ENSG00000162444 [Gene_View]  chr1:10057255-10076078 [Contig_View]  RBP7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000162444 [Gene_View]  chr1:10057255-10076078 [Contig_View]  RBP7 [Vega]
ICGC DataPortalENSG00000162444
TCGA cBioPortalRBP7
AceView (NCBI)RBP7
Genatlas (Paris)RBP7
WikiGenes116362
SOURCE (Princeton)RBP7
Genetics Home Reference (NIH)RBP7
Genomic and cartography
GoldenPath hg19 (UCSC)RBP7  -     chr1:10057255-10076078 +  1p36.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBP7  -     1p36.22   [Description]    (hg38-Dec_2013)
EnsemblRBP7 - 1p36.22 [CytoView hg19]  RBP7 - 1p36.22 [CytoView hg38]
Mapping of homologs : NCBIRBP7 [Mapview hg19]  RBP7 [Mapview hg38]
OMIM608604   
Gene and transcription
Genbank (Entrez)AF399927 AK312027 AY145438 BC033883 BC063013
RefSeq transcript (Entrez)NM_052960
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)RBP7
Cluster EST : UnigeneHs.422688 [ NCBI ]
CGAP (NCI)Hs.422688
Alternative Splicing GalleryENSG00000162444
Gene ExpressionRBP7 [ NCBI-GEO ]   RBP7 [ EBI - ARRAY_EXPRESS ]   RBP7 [ SEEK ]   RBP7 [ MEM ]
Gene Expression Viewer (FireBrowse)RBP7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116362
GTEX Portal (Tissue expression)RBP7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96R05   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96R05  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96R05
Splice isoforms : SwissVarQ96R05
PhosPhoSitePlusQ96R05
Domaine pattern : Prosite (Expaxy)FABP (PS00214)   
Domains : Interpro (EBI)Calycin    Calycin-like    Fatty_acid-bd    Lipocln_cytosolic_FA-bd_dom   
Domain families : Pfam (Sanger)Lipocalin (PF00061)   
Domain families : Pfam (NCBI)pfam00061   
Conserved Domain (NCBI)RBP7
DMDM Disease mutations116362
Blocks (Seattle)RBP7
PDB (SRS)1LPJ   
PDB (PDBSum)1LPJ   
PDB (IMB)1LPJ   
PDB (RSDB)1LPJ   
Structural Biology KnowledgeBase1LPJ   
SCOP (Structural Classification of Proteins)1LPJ   
CATH (Classification of proteins structures)1LPJ   
SuperfamilyQ96R05
Human Protein AtlasENSG00000162444
Peptide AtlasQ96R05
HPRD16355
IPIIPI00179804   IPI00743947   IPI00513837   
Protein Interaction databases
DIP (DOE-UCLA)Q96R05
IntAct (EBI)Q96R05
FunCoupENSG00000162444
BioGRIDRBP7
STRING (EMBL)RBP7
ZODIACRBP7
Ontologies - Pathways
QuickGOQ96R05
Ontology : AmiGOtransporter activity  protein binding  cytoplasm  transport  retinal binding  retinol binding  
Ontology : EGO-EBItransporter activity  protein binding  cytoplasm  transport  retinal binding  retinol binding  
NDEx NetworkRBP7
Atlas of Cancer Signalling NetworkRBP7
Wikipedia pathwaysRBP7
Orthology - Evolution
OrthoDB116362
GeneTree (enSembl)ENSG00000162444
Phylogenetic Trees/Animal Genes : TreeFamRBP7
HOVERGENQ96R05
HOGENOMQ96R05
Homologs : HomoloGeneRBP7
Homology/Alignments : Family Browser (UCSC)RBP7
Gene fusions - Rearrangements
Fusion: TCGAKIRREL RBP7
Fusion: TCGAUBE4B RBP7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBP7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBP7
dbVarRBP7
ClinVarRBP7
1000_GenomesRBP7 
Exome Variant ServerRBP7
ExAC (Exome Aggregation Consortium)RBP7 (select the gene name)
Genetic variants : HAPMAP116362
Genomic Variants (DGV)RBP7 [DGVbeta]
DECIPHER (Syndromes)1:10057255-10076078  ENSG00000162444
CONAN: Copy Number AnalysisRBP7 
Mutations
ICGC Data PortalRBP7 
TCGA Data PortalRBP7 
Broad Tumor PortalRBP7
OASIS PortalRBP7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBP7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBP7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBP7
DgiDB (Drug Gene Interaction Database)RBP7
DoCM (Curated mutations)RBP7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBP7 (select a term)
intoGenRBP7
Cancer3DRBP7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608604   
Orphanet
MedgenRBP7
Genetic Testing Registry RBP7
NextProtQ96R05 [Medical]
TSGene116362
GENETestsRBP7
Huge Navigator RBP7 [HugePedia]
snp3D : Map Gene to Disease116362
BioCentury BCIQRBP7
ClinGenRBP7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116362
Chemical/Pharm GKB GenePA134988307
Clinical trialRBP7
Miscellaneous
canSAR (ICR)RBP7 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBP7
EVEXRBP7
GoPubMedRBP7
iHOPRBP7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:40:46 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.