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RBPJL (recombination signal binding protein for immunoglobulin kappa J region like)

Identity

Alias_namesRBPSUHL
recombining binding protein suppressor of hairless (Drosophila)-like
recombination signal binding protein for immunoglobulin kappa J region-like
Alias_symbol (synonym)RBP-L
SUH
SUHL
Other aliasRBPL
HGNC (Hugo) RBPJL
LocusID (NCBI) 11317
Atlas_Id 72551
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 45306843 and ends at 45317824 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBPJL   13761
Cards
Entrez_Gene (NCBI)RBPJL  11317  recombination signal binding protein for immunoglobulin kappa J region like
AliasesRBPL; RBPSUHL; SUHL
GeneCards (Weizmann)RBPJL
Ensembl hg19 (Hinxton)ENSG00000124232 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124232 [Gene_View]  chr20:45306843-45317824 [Contig_View]  RBPJL [Vega]
ICGC DataPortalENSG00000124232
TCGA cBioPortalRBPJL
AceView (NCBI)RBPJL
Genatlas (Paris)RBPJL
WikiGenes11317
SOURCE (Princeton)RBPJL
Genetics Home Reference (NIH)RBPJL
Genomic and cartography
GoldenPath hg38 (UCSC)RBPJL  -     chr20:45306843-45317824 +  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBPJL  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblRBPJL - 20q13.12 [CytoView hg19]  RBPJL - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIRBPJL [Mapview hg19]  RBPJL [Mapview hg38]
OMIM616104   
Gene and transcription
Genbank (Entrez)AB024964 AB026048 AB027710 BC030213 BC152895
RefSeq transcript (Entrez)NM_001281448 NM_001281449 NM_014276
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBPJL
Cluster EST : UnigeneHs.278489 [ NCBI ]
CGAP (NCI)Hs.278489
Alternative Splicing GalleryENSG00000124232
Gene ExpressionRBPJL [ NCBI-GEO ]   RBPJL [ EBI - ARRAY_EXPRESS ]   RBPJL [ SEEK ]   RBPJL [ MEM ]
Gene Expression Viewer (FireBrowse)RBPJL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11317
GTEX Portal (Tissue expression)RBPJL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBG7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBG7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBG7
Splice isoforms : SwissVarQ9UBG7
PhosPhoSitePlusQ9UBG7
Domains : Interpro (EBI)Beta-trefoil_DNA-bd_dom    Ig-like_fold    Ig_E-set    LAG1_DNA-bd    p53-like_TF_DNA-bd   
Domain families : Pfam (Sanger)BTD (PF09270)    LAG1-DNAbind (PF09271)   
Domain families : Pfam (NCBI)pfam09270    pfam09271   
Domain families : Smart (EMBL)BTD (SM01268)  LAG1_DNAbind (SM01267)  
Conserved Domain (NCBI)RBPJL
DMDM Disease mutations11317
Blocks (Seattle)RBPJL
SuperfamilyQ9UBG7
Human Protein AtlasENSG00000124232
Peptide AtlasQ9UBG7
HPRD10187
IPIIPI00646515   IPI00219057   IPI00514966   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBG7
IntAct (EBI)Q9UBG7
FunCoupENSG00000124232
BioGRIDRBPJL
STRING (EMBL)RBPJL
ZODIACRBPJL
Ontologies - Pathways
QuickGOQ9UBG7
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  chromatin binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription factor complex  transcription from RNA polymerase II promoter  signal transduction  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  chromatin binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription factor complex  transcription from RNA polymerase II promoter  signal transduction  positive regulation of transcription from RNA polymerase II promoter  
Pathways : KEGGNotch signaling pathway    Epstein-Barr virus infection    Viral carcinogenesis   
NDEx NetworkRBPJL
Atlas of Cancer Signalling NetworkRBPJL
Wikipedia pathwaysRBPJL
Orthology - Evolution
OrthoDB11317
GeneTree (enSembl)ENSG00000124232
Phylogenetic Trees/Animal Genes : TreeFamRBPJL
HOVERGENQ9UBG7
HOGENOMQ9UBG7
Homologs : HomoloGeneRBPJL
Homology/Alignments : Family Browser (UCSC)RBPJL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBPJL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBPJL
dbVarRBPJL
ClinVarRBPJL
1000_GenomesRBPJL 
Exome Variant ServerRBPJL
ExAC (Exome Aggregation Consortium)RBPJL (select the gene name)
Genetic variants : HAPMAP11317
Genomic Variants (DGV)RBPJL [DGVbeta]
DECIPHERRBPJL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBPJL 
Mutations
ICGC Data PortalRBPJL 
TCGA Data PortalRBPJL 
Broad Tumor PortalRBPJL
OASIS PortalRBPJL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBPJL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBPJL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBPJL
DgiDB (Drug Gene Interaction Database)RBPJL
DoCM (Curated mutations)RBPJL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBPJL (select a term)
intoGenRBPJL
Cancer3DRBPJL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616104   
Orphanet
MedgenRBPJL
Genetic Testing Registry RBPJL
NextProtQ9UBG7 [Medical]
TSGene11317
GENETestsRBPJL
Target ValidationRBPJL
Huge Navigator RBPJL [HugePedia]
snp3D : Map Gene to Disease11317
BioCentury BCIQRBPJL
ClinGenRBPJL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11317
Chemical/Pharm GKB GenePA162400876
Clinical trialRBPJL
Miscellaneous
canSAR (ICR)RBPJL (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBPJL
EVEXRBPJL
GoPubMedRBPJL
iHOPRBPJL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:37:11 CEST 2017

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