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RBPMS (RNA binding protein, mRNA processing factor)

Identity

Alias (NCBI)HERMES
HGNC (Hugo) RBPMS
HGNC Alias symbHERMES
HGNC Previous nameRNA binding protein with multiple splicing
LocusID (NCBI) 11030
Atlas_Id 51248
Location 8p12  [Link to chromosome band 8p12]
Location_base_pair Starts at 30384541 and ends at 30572256 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ELP3 (8p21.1)::RBPMS (8p12)GTF2E2 (8p12)::RBPMS (8p12)MTPN (7q33)::RBPMS (8p12)
NOP56 (20p13)::RBPMS (8p12)NTRK3 (15q25.3)::RBPMS (8p12)RBPMS (8p12)::CD53 (1p13.3)
RBPMS (8p12)::NTRK3 (15q25.3)RBPMS (8p12)::RBM26 (13q31.1)RBPMS (8p12)::RBPMS (8p12)
RBPMS (8p12)::RILPL1 (12q24.31)TTC37 (5q15)::RBPMS (8p12)GTF2E2 8p12::RBPMS 8p12
NTRK3 15q25.3::RBPMS 8p12RBPMS 8p12::NTRK3 15q25.3RBPMS 8p12::RILPL1 12q24.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RBPMS   19097
Cards
Entrez_Gene (NCBI)RBPMS    RNA binding protein, mRNA processing factor
AliasesHERMES
GeneCards (Weizmann)RBPMS
Ensembl hg19 (Hinxton)ENSG00000157110 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157110 [Gene_View]  ENSG00000157110 [Sequence]  chr8:30384541-30572256 [Contig_View]  RBPMS [Vega]
ICGC DataPortalENSG00000157110
TCGA cBioPortalRBPMS
AceView (NCBI)RBPMS
Genatlas (Paris)RBPMS
SOURCE (Princeton)RBPMS
Genetics Home Reference (NIH)RBPMS
Genomic and cartography
GoldenPath hg38 (UCSC)RBPMS  -     chr8:30384541-30572256 +  8p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RBPMS  -     8p12   [Description]    (hg19-Feb_2009)
GoldenPathRBPMS - 8p12 [CytoView hg19]  RBPMS - 8p12 [CytoView hg38]
ImmunoBaseENSG00000157110
Genome Data Viewer NCBIRBPMS [Mapview hg19]  
OMIM601558   
Gene and transcription
Genbank (Entrez)AI025136 AK024192 AK057533 AK098281 AK304858
RefSeq transcript (Entrez)NM_001008710 NM_001008711 NM_001008712 NM_006867
Consensus coding sequences : CCDS (NCBI)RBPMS
Gene ExpressionRBPMS [ NCBI-GEO ]   RBPMS [ EBI - ARRAY_EXPRESS ]   RBPMS [ SEEK ]   RBPMS [ MEM ]
Gene Expression Viewer (FireBrowse)RBPMS [ Firebrowse - Broad ]
GenevisibleExpression of RBPMS in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11030
GTEX Portal (Tissue expression)RBPMS
Human Protein AtlasENSG00000157110-RBPMS [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ93062   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ93062  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ93062
PhosPhoSitePlusQ93062
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBPMS
PDB (RSDB)1BNY    5CYJ    5DET   
PDB Europe1BNY    5CYJ    5DET   
PDB (PDBSum)1BNY    5CYJ    5DET   
PDB (IMB)1BNY    5CYJ    5DET   
Structural Biology KnowledgeBase1BNY    5CYJ    5DET   
SCOP (Structural Classification of Proteins)1BNY    5CYJ    5DET   
CATH (Classification of proteins structures)1BNY    5CYJ    5DET   
SuperfamilyQ93062
AlphaFold pdb e-kbQ93062   
Human Protein Atlas [tissue]ENSG00000157110-RBPMS [tissue]
HPRD11870
Protein Interaction databases
DIP (DOE-UCLA)Q93062
IntAct (EBI)Q93062
BioGRIDRBPMS
STRING (EMBL)RBPMS
ZODIACRBPMS
Ontologies - Pathways
QuickGOQ93062
Ontology : AmiGOP-body  transcription coactivator activity  RNA binding  RNA binding  mRNA binding  protein binding  nucleoplasm  cytosol  RNA processing  response to oxidative stress  poly(A) binding  cytoplasmic stress granule  positive regulation of pathway-restricted SMAD protein phosphorylation  protein homodimerization activity  positive regulation of transcription, DNA-templated  positive regulation of SMAD protein signal transduction  
Ontology : EGO-EBIP-body  transcription coactivator activity  RNA binding  RNA binding  mRNA binding  protein binding  nucleoplasm  cytosol  RNA processing  response to oxidative stress  poly(A) binding  cytoplasmic stress granule  positive regulation of pathway-restricted SMAD protein phosphorylation  protein homodimerization activity  positive regulation of transcription, DNA-templated  positive regulation of SMAD protein signal transduction  
NDEx NetworkRBPMS
Atlas of Cancer Signalling NetworkRBPMS
Wikipedia pathwaysRBPMS
Orthology - Evolution
OrthoDB11030
GeneTree (enSembl)ENSG00000157110
Phylogenetic Trees/Animal Genes : TreeFamRBPMS
Homologs : HomoloGeneRBPMS
Homology/Alignments : Family Browser (UCSC)RBPMS
Gene fusions - Rearrangements
Fusion : MitelmanELP3::RBPMS [8p21.1/8p12]  
Fusion : MitelmanNTRK3::RBPMS [15q25.3/8p12]  
Fusion : MitelmanRBPMS::NTRK3 [8p12/15q25.3]  
Fusion : MitelmanRBPMS::RILPL1 [8p12/12q24.31]  
Fusion : QuiverRBPMS
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBPMS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBPMS
dbVarRBPMS
ClinVarRBPMS
MonarchRBPMS
1000_GenomesRBPMS 
Exome Variant ServerRBPMS
GNOMAD BrowserENSG00000157110
Varsome BrowserRBPMS
ACMGRBPMS variants
VarityQ93062
Genomic Variants (DGV)RBPMS [DGVbeta]
DECIPHERRBPMS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRBPMS 
Mutations
ICGC Data PortalRBPMS 
TCGA Data PortalRBPMS 
Broad Tumor PortalRBPMS
OASIS PortalRBPMS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBPMS  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRBPMS
Mutations and Diseases : HGMDRBPMS
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRBPMS
DgiDB (Drug Gene Interaction Database)RBPMS
DoCM (Curated mutations)RBPMS
CIViC (Clinical Interpretations of Variants in Cancer)RBPMS
Cancer3DRBPMS
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601558   
Orphanet
DisGeNETRBPMS
MedgenRBPMS
Genetic Testing Registry RBPMS
NextProtQ93062 [Medical]
GENETestsRBPMS
Target ValidationRBPMS
Huge Navigator RBPMS [HugePedia]
ClinGenRBPMS
Clinical trials, drugs, therapy
MyCancerGenomeRBPMS
Protein Interactions : CTDRBPMS
Pharm GKB GenePA134985584
PharosQ93062
Clinical trialRBPMS
Miscellaneous
canSAR (ICR)RBPMS
HarmonizomeRBPMS
ARCHS4RBPMS
DataMed IndexRBPMS
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRBPMS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 18:30:47 CET 2022

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