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RBPMS (RNA binding protein with multiple splicing)

Identity

Alias_symbol (synonym)HERMES
Other alias
HGNC (Hugo) RBPMS
LocusID (NCBI) 11030
Atlas_Id 51248
Location 8p12  [Link to chromosome band 8p12]
Location_base_pair Starts at 30242017 and ends at 30429778 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ELP3 (8p21.1) / RBPMS (8p12)GTF2E2 (8p12) / RBPMS (8p12)MTPN (7q33) / RBPMS (8p12)
NOP56 (20p13) / RBPMS (8p12)NTRK3 (15q25.3) / RBPMS (8p12)RBPMS (8p12) / CD53 (1p13.3)
RBPMS (8p12) / NTRK3 (15q25.3)RBPMS (8p12) / RBM26 (13q31.1)RBPMS (8p12) / RBPMS (8p12)
RBPMS (8p12) / RILPL1 (12q24.31)TTC37 (5q15) / RBPMS (8p12)GTF2E2 8p12 / RBPMS 8p12
NTRK3 15q25.3 / RBPMS 8p12RBPMS 8p12 / NTRK3 15q25.3RBPMS 8p12 / RILPL1 12q24.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBPMS   19097
Cards
Entrez_Gene (NCBI)RBPMS  11030  RNA binding protein with multiple splicing
AliasesHERMES
GeneCards (Weizmann)RBPMS
Ensembl hg19 (Hinxton)ENSG00000157110 [Gene_View]  chr8:30242017-30429778 [Contig_View]  RBPMS [Vega]
Ensembl hg38 (Hinxton)ENSG00000157110 [Gene_View]  chr8:30242017-30429778 [Contig_View]  RBPMS [Vega]
ICGC DataPortalENSG00000157110
TCGA cBioPortalRBPMS
AceView (NCBI)RBPMS
Genatlas (Paris)RBPMS
WikiGenes11030
SOURCE (Princeton)RBPMS
Genetics Home Reference (NIH)RBPMS
Genomic and cartography
GoldenPath hg19 (UCSC)RBPMS  -     chr8:30242017-30429778 +  8p12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBPMS  -     8p12   [Description]    (hg38-Dec_2013)
EnsemblRBPMS - 8p12 [CytoView hg19]  RBPMS - 8p12 [CytoView hg38]
Mapping of homologs : NCBIRBPMS [Mapview hg19]  RBPMS [Mapview hg38]
OMIM601558   
Gene and transcription
Genbank (Entrez)AI025136 AK024192 AK057533 AK098281 AK304858
RefSeq transcript (Entrez)NM_001008710 NM_001008711 NM_001008712 NM_006867
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_029534 NT_167187 NW_004929337
Consensus coding sequences : CCDS (NCBI)RBPMS
Cluster EST : UnigeneHs.334587 [ NCBI ]
CGAP (NCI)Hs.334587
Alternative Splicing GalleryENSG00000157110
Gene ExpressionRBPMS [ NCBI-GEO ]   RBPMS [ EBI - ARRAY_EXPRESS ]   RBPMS [ SEEK ]   RBPMS [ MEM ]
Gene Expression Viewer (FireBrowse)RBPMS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11030
GTEX Portal (Tissue expression)RBPMS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ93062   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ93062  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ93062
Splice isoforms : SwissVarQ93062
PhosPhoSitePlusQ93062
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom    RRM_U1_A/B''   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBPMS
DMDM Disease mutations11030
Blocks (Seattle)RBPMS
PDB (SRS)1BNY    5CYJ    5DET   
PDB (PDBSum)1BNY    5CYJ    5DET   
PDB (IMB)1BNY    5CYJ    5DET   
PDB (RSDB)1BNY    5CYJ    5DET   
Structural Biology KnowledgeBase1BNY    5CYJ    5DET   
SCOP (Structural Classification of Proteins)1BNY    5CYJ    5DET   
CATH (Classification of proteins structures)1BNY    5CYJ    5DET   
SuperfamilyQ93062
Human Protein AtlasENSG00000157110
Peptide AtlasQ93062
HPRD11870
IPIIPI00004045   IPI00216935   IPI00101800   IPI00216936   IPI00414709   IPI00908913   IPI00979729   IPI00983299   IPI00982020   IPI00980313   
Protein Interaction databases
DIP (DOE-UCLA)Q93062
IntAct (EBI)Q93062
FunCoupENSG00000157110
BioGRIDRBPMS
STRING (EMBL)RBPMS
ZODIACRBPMS
Ontologies - Pathways
QuickGOQ93062
Ontology : AmiGOnucleotide binding  mRNA splicing, via spliceosome  transcription coactivator activity  protein binding  nucleoplasm  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  RNA processing  poly(A) binding  positive regulation of pathway-restricted SMAD protein phosphorylation  snRNA binding  poly(A) RNA binding  positive regulation of SMAD protein import into nucleus  
Ontology : EGO-EBInucleotide binding  mRNA splicing, via spliceosome  transcription coactivator activity  protein binding  nucleoplasm  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  RNA processing  poly(A) binding  positive regulation of pathway-restricted SMAD protein phosphorylation  snRNA binding  poly(A) RNA binding  positive regulation of SMAD protein import into nucleus  
NDEx NetworkRBPMS
Atlas of Cancer Signalling NetworkRBPMS
Wikipedia pathwaysRBPMS
Orthology - Evolution
OrthoDB11030
GeneTree (enSembl)ENSG00000157110
Phylogenetic Trees/Animal Genes : TreeFamRBPMS
HOVERGENQ93062
HOGENOMQ93062
Homologs : HomoloGeneRBPMS
Homology/Alignments : Family Browser (UCSC)RBPMS
Gene fusions - Rearrangements
Fusion : MitelmanELP3/RBPMS [8p21.1/8p12]  [t(8;8)(p12;p21)]  
Fusion : MitelmanNTRK3/RBPMS [15q25.3/8p12]  [t(8;15)(p12;q25)]  
Fusion : MitelmanRBPMS/NTRK3 [8p12/15q25.3]  [t(8;15)(p12;q25)]  
Fusion : MitelmanRBPMS/RILPL1 [8p12/12q24.31]  [t(8;12)(p12;q24)]  
Fusion: TCGAGTF2E2 8p12 RBPMS 8p12 LUAD
Fusion: TCGANTRK3 15q25.3 RBPMS 8p12 THCA
Fusion: TCGARBPMS 8p12 NTRK3 15q25.3 THCA
Fusion: TCGARBPMS 8p12 RILPL1 12q24.31 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBPMS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBPMS
dbVarRBPMS
ClinVarRBPMS
1000_GenomesRBPMS 
Exome Variant ServerRBPMS
ExAC (Exome Aggregation Consortium)RBPMS (select the gene name)
Genetic variants : HAPMAP11030
Genomic Variants (DGV)RBPMS [DGVbeta]
DECIPHER (Syndromes)8:30242017-30429778  ENSG00000157110
CONAN: Copy Number AnalysisRBPMS 
Mutations
ICGC Data PortalRBPMS 
TCGA Data PortalRBPMS 
Broad Tumor PortalRBPMS
OASIS PortalRBPMS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBPMS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBPMS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBPMS
DgiDB (Drug Gene Interaction Database)RBPMS
DoCM (Curated mutations)RBPMS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBPMS (select a term)
intoGenRBPMS
Cancer3DRBPMS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601558   
Orphanet
MedgenRBPMS
Genetic Testing Registry RBPMS
NextProtQ93062 [Medical]
TSGene11030
GENETestsRBPMS
Huge Navigator RBPMS [HugePedia]
snp3D : Map Gene to Disease11030
BioCentury BCIQRBPMS
ClinGenRBPMS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11030
Chemical/Pharm GKB GenePA134985584
Clinical trialRBPMS
Miscellaneous
canSAR (ICR)RBPMS (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBPMS
EVEXRBPMS
GoPubMedRBPMS
iHOPRBPMS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:17:06 CEST 2017

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