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RBPMS2 (RNA binding protein with multiple splicing 2)

Identity

Other alias-
HGNC (Hugo) RBPMS2
LocusID (NCBI) 348093
Atlas_Id 53363
Location 15q22.31  [Link to chromosome band 15q22]
Location_base_pair Starts at 65032095 and ends at 65067770 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CHMP4B (20q11.22) / RBPMS2 (15q22.31)H2AFZ (4q23) / RBPMS2 (15q22.31)RBPMS2 (15q22.31) / OAZ2 (15q22.31)
RBPMS2 (15q22.31) / RBPMS2 (15q22.31)VPS54 (2p14) / RBPMS2 (15q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RBPMS2   19098
Cards
Entrez_Gene (NCBI)RBPMS2  348093  RNA binding protein with multiple splicing 2
Aliases
GeneCards (Weizmann)RBPMS2
Ensembl hg19 (Hinxton)ENSG00000166831 [Gene_View]  chr15:65032095-65067770 [Contig_View]  RBPMS2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166831 [Gene_View]  chr15:65032095-65067770 [Contig_View]  RBPMS2 [Vega]
ICGC DataPortalENSG00000166831
TCGA cBioPortalRBPMS2
AceView (NCBI)RBPMS2
Genatlas (Paris)RBPMS2
WikiGenes348093
SOURCE (Princeton)RBPMS2
Genetics Home Reference (NIH)RBPMS2
Genomic and cartography
GoldenPath hg19 (UCSC)RBPMS2  -     chr15:65032095-65067770 -  15q22.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBPMS2  -     15q22.31   [Description]    (hg38-Dec_2013)
EnsemblRBPMS2 - 15q22.31 [CytoView hg19]  RBPMS2 - 15q22.31 [CytoView hg38]
Mapping of homologs : NCBIRBPMS2 [Mapview hg19]  RBPMS2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124123 AK127873 AY369207 BC131612 BC148208
RefSeq transcript (Entrez)NM_194272
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)RBPMS2
Cluster EST : UnigeneHs.436518 [ NCBI ]
CGAP (NCI)Hs.436518
Alternative Splicing GalleryENSG00000166831
Gene ExpressionRBPMS2 [ NCBI-GEO ]   RBPMS2 [ EBI - ARRAY_EXPRESS ]   RBPMS2 [ SEEK ]   RBPMS2 [ MEM ]
Gene Expression Viewer (FireBrowse)RBPMS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348093
GTEX Portal (Tissue expression)RBPMS2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRY4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRY4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRY4
Splice isoforms : SwissVarQ6ZRY4
PhosPhoSitePlusQ6ZRY4
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)RBPMS2
DMDM Disease mutations348093
Blocks (Seattle)RBPMS2
PDB (SRS)2M9K   
PDB (PDBSum)2M9K   
PDB (IMB)2M9K   
PDB (RSDB)2M9K   
Structural Biology KnowledgeBase2M9K   
SCOP (Structural Classification of Proteins)2M9K   
CATH (Classification of proteins structures)2M9K   
SuperfamilyQ6ZRY4
Human Protein AtlasENSG00000166831
Peptide AtlasQ6ZRY4
HPRD18601
IPIIPI00238688   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRY4
IntAct (EBI)Q6ZRY4
FunCoupENSG00000166831
BioGRIDRBPMS2
STRING (EMBL)RBPMS2
ZODIACRBPMS2
Ontologies - Pathways
QuickGOQ6ZRY4
Ontology : AmiGOnucleotide binding  nucleic acid binding  
Ontology : EGO-EBInucleotide binding  nucleic acid binding  
NDEx NetworkRBPMS2
Atlas of Cancer Signalling NetworkRBPMS2
Wikipedia pathwaysRBPMS2
Orthology - Evolution
OrthoDB348093
GeneTree (enSembl)ENSG00000166831
Phylogenetic Trees/Animal Genes : TreeFamRBPMS2
HOVERGENQ6ZRY4
HOGENOMQ6ZRY4
Homologs : HomoloGeneRBPMS2
Homology/Alignments : Family Browser (UCSC)RBPMS2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBPMS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBPMS2
dbVarRBPMS2
ClinVarRBPMS2
1000_GenomesRBPMS2 
Exome Variant ServerRBPMS2
ExAC (Exome Aggregation Consortium)RBPMS2 (select the gene name)
Genetic variants : HAPMAP348093
Genomic Variants (DGV)RBPMS2 [DGVbeta]
DECIPHER (Syndromes)15:65032095-65067770  ENSG00000166831
CONAN: Copy Number AnalysisRBPMS2 
Mutations
ICGC Data PortalRBPMS2 
TCGA Data PortalRBPMS2 
Broad Tumor PortalRBPMS2
OASIS PortalRBPMS2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRBPMS2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRBPMS2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RBPMS2
DgiDB (Drug Gene Interaction Database)RBPMS2
DoCM (Curated mutations)RBPMS2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBPMS2 (select a term)
intoGenRBPMS2
Cancer3DRBPMS2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRBPMS2
Genetic Testing Registry RBPMS2
NextProtQ6ZRY4 [Medical]
TSGene348093
GENETestsRBPMS2
Huge Navigator RBPMS2 [HugePedia]
snp3D : Map Gene to Disease348093
BioCentury BCIQRBPMS2
ClinGenRBPMS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD348093
Chemical/Pharm GKB GenePA134871904
Clinical trialRBPMS2
Miscellaneous
canSAR (ICR)RBPMS2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBPMS2
EVEXRBPMS2
GoPubMedRBPMS2
iHOPRBPMS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:24:39 CET 2017

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