Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RBSN (rabenosyn, RAB effector)

Identity

Alias_namesZFYVE20
zinc finger
Other aliasRabenosyn-5
HGNC (Hugo) RBSN
LocusID (NCBI) 64145
Atlas_Id 56002
Location 3p25.1  [Link to chromosome band 3p25]
Location_base_pair Starts at 15111576 and ends at 15140664 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RBSN (3p25.1) / TMEM136 (11q23.3)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)RBSN   20759
Cards
Entrez_Gene (NCBI)RBSN  64145  rabenosyn, RAB effector
AliasesRabenosyn-5; ZFYVE20
GeneCards (Weizmann)RBSN
Ensembl hg19 (Hinxton)ENSG00000131381 [Gene_View]  chr3:15111576-15140664 [Contig_View]  RBSN [Vega]
Ensembl hg38 (Hinxton)ENSG00000131381 [Gene_View]  chr3:15111576-15140664 [Contig_View]  RBSN [Vega]
ICGC DataPortalENSG00000131381
TCGA cBioPortalRBSN
AceView (NCBI)RBSN
Genatlas (Paris)RBSN
WikiGenes64145
SOURCE (Princeton)RBSN
Genetics Home Reference (NIH)RBSN
Genomic and cartography
GoldenPath hg19 (UCSC)RBSN  -     chr3:15111576-15140664 -  3p25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RBSN  -     3p25.1   [Description]    (hg38-Dec_2013)
EnsemblRBSN - 3p25.1 [CytoView hg19]  RBSN - 3p25.1 [CytoView hg38]
Mapping of homologs : NCBIRBSN [Mapview hg19]  RBSN [Mapview hg38]
OMIM609511   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001302378 NM_022340
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RBSN
Cluster EST : UnigeneHs.706478 [ NCBI ]
CGAP (NCI)Hs.706478
Alternative Splicing GalleryENSG00000131381
Gene ExpressionRBSN [ NCBI-GEO ]   RBSN [ EBI - ARRAY_EXPRESS ]   RBSN [ SEEK ]   RBSN [ MEM ]
Gene Expression Viewer (FireBrowse)RBSN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64145
GTEX Portal (Tissue expression)RBSN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1K0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1K0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1K0
Splice isoforms : SwissVarQ9H1K0
PhosPhoSitePlusQ9H1K0
Domaine pattern : Prosite (Expaxy)ZF_FYVE (PS50178)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Rbsn_Rab_binding_dom    Znf_C2H2    Znf_FYVE    Znf_FYVE-rel    Znf_FYVE_PHD    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)FYVE (PF01363)    Rbsn (PF11464)   
Domain families : Pfam (NCBI)pfam01363    pfam11464   
Domain families : Smart (EMBL)FYVE (SM00064)  
Conserved Domain (NCBI)RBSN
DMDM Disease mutations64145
Blocks (Seattle)RBSN
PDB (SRS)1YZM    1Z0J    1Z0K   
PDB (PDBSum)1YZM    1Z0J    1Z0K   
PDB (IMB)1YZM    1Z0J    1Z0K   
PDB (RSDB)1YZM    1Z0J    1Z0K   
Structural Biology KnowledgeBase1YZM    1Z0J    1Z0K   
SCOP (Structural Classification of Proteins)1YZM    1Z0J    1Z0K   
CATH (Classification of proteins structures)1YZM    1Z0J    1Z0K   
SuperfamilyQ9H1K0
Human Protein AtlasENSG00000131381
Peptide AtlasQ9H1K0
HPRD15732
IPIIPI00007057   IPI00926268   IPI00815744   IPI00794435   IPI00926123   IPI00925462   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1K0
IntAct (EBI)Q9H1K0
FunCoupENSG00000131381
BioGRIDRBSN
STRING (EMBL)RBSN
ZODIACRBSN
Ontologies - Pathways
QuickGOQ9H1K0
Ontology : AmiGOvacuole inheritance  protein binding  endosome  cytosol  plasma membrane  Golgi to endosome transport  Golgi to vacuole transport  endocytosis  blood coagulation  zinc ion binding  endosome membrane  cytoplasmic side of endosome membrane  protein transport  endosomal transport  Rab GTPase binding  early endosome membrane  endosomal vesicle fusion  early endosome to Golgi transport  intracellular membrane-bounded organelle  extracellular exosome  Golgi to lysosome transport  regulation of Golgi organization  
Ontology : EGO-EBIvacuole inheritance  protein binding  endosome  cytosol  plasma membrane  Golgi to endosome transport  Golgi to vacuole transport  endocytosis  blood coagulation  zinc ion binding  endosome membrane  cytoplasmic side of endosome membrane  protein transport  endosomal transport  Rab GTPase binding  early endosome membrane  endosomal vesicle fusion  early endosome to Golgi transport  intracellular membrane-bounded organelle  extracellular exosome  Golgi to lysosome transport  regulation of Golgi organization  
NDEx NetworkRBSN
Atlas of Cancer Signalling NetworkRBSN
Wikipedia pathwaysRBSN
Orthology - Evolution
OrthoDB64145
GeneTree (enSembl)ENSG00000131381
Phylogenetic Trees/Animal Genes : TreeFamRBSN
HOVERGENQ9H1K0
HOGENOMQ9H1K0
Homologs : HomoloGeneRBSN
Homology/Alignments : Family Browser (UCSC)RBSN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRBSN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RBSN
dbVarRBSN
ClinVarRBSN
1000_GenomesRBSN 
Exome Variant ServerRBSN
ExAC (Exome Aggregation Consortium)RBSN (select the gene name)
Genetic variants : HAPMAP64145
Genomic Variants (DGV)RBSN [DGVbeta]
DECIPHER (Syndromes)3:15111576-15140664  ENSG00000131381
CONAN: Copy Number AnalysisRBSN 
Mutations
ICGC Data PortalRBSN 
TCGA Data PortalRBSN 
Broad Tumor PortalRBSN
OASIS PortalRBSN [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRBSN
BioMutasearch RBSN
DgiDB (Drug Gene Interaction Database)RBSN
DoCM (Curated mutations)RBSN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RBSN (select a term)
intoGenRBSN
Cancer3DRBSN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609511   
Orphanet
MedgenRBSN
Genetic Testing Registry RBSN
NextProtQ9H1K0 [Medical]
TSGene64145
GENETestsRBSN
Huge Navigator RBSN [HugePedia]
snp3D : Map Gene to Disease64145
BioCentury BCIQRBSN
ClinGenRBSN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64145
Chemical/Pharm GKB GenePA134959491
Clinical trialRBSN
Miscellaneous
canSAR (ICR)RBSN (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRBSN
EVEXRBSN
GoPubMedRBSN
iHOPRBSN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:24:39 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.