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RCAN1 (regulator of calcineurin 1)

Identity

Alias (NCBI)ADAPT78
CSP1
DSC1
DSCR1
MCIP1
RCN1
HGNC (Hugo) RCAN1
HGNC Previous nameDSCR1
HGNC Previous nameDown syndrome critical region gene 1
LocusID (NCBI) 1827
Atlas_Id 50865
Location 21q22.12  [Link to chromosome band 21q22]
Location_base_pair Starts at 34516443 and ends at 34526822 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
APP (21q21.3) / RCAN1 (21q22.12)RCAN1 (21q22.12) / GART (21q22.11)RCAN1 (21q22.12) / RCAN1 (21q22.12)
RCAN1 (21q22.12) / RUNX1 (21q22.12)SRP68 (17q25.1) / RCAN1 (21q22.12)TNPO3 (7q32.1) / RCAN1 (21q22.12)
APP 21q21.3 / RCAN1 21q22.12RCAN1 21q22.12 / GART 21q22.11RCAN1 21q22.12 / RUNX1 21q22.12
SRP68 17q25.1 / RCAN1 21q22.12TNPO3 7q32.1 / RCAN1 21q22.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(4;21)(q28;q22) RCAN1/SPRY1


External links

Nomenclature
HGNC (Hugo)RCAN1   3040
Cards
Entrez_Gene (NCBI)RCAN1    regulator of calcineurin 1
AliasesADAPT78; CSP1; DSC1; DSCR1; 
MCIP1; RCN1
GeneCards (Weizmann)RCAN1
Ensembl hg19 (Hinxton)ENSG00000159200 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159200 [Gene_View]  ENSG00000159200 [Sequence]  chr21:34516443-34526822 [Contig_View]  RCAN1 [Vega]
ICGC DataPortalENSG00000159200
TCGA cBioPortalRCAN1
AceView (NCBI)RCAN1
Genatlas (Paris)RCAN1
SOURCE (Princeton)RCAN1
Genetics Home Reference (NIH)RCAN1
Genomic and cartography
GoldenPath hg38 (UCSC)RCAN1  -     chr21:34516443-34526822 -  21q22.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RCAN1  -     21q22.12   [Description]    (hg19-Feb_2009)
GoldenPathRCAN1 - 21q22.12 [CytoView hg19]  RCAN1 - 21q22.12 [CytoView hg38]
ImmunoBaseENSG00000159200
Genome Data Viewer NCBIRCAN1 [Mapview hg19]  
OMIM602917   
Gene and transcription
Genbank (Entrez)AF303449 AF400429 AI079710 AK055845 AK092184
RefSeq transcript (Entrez)NM_001285389 NM_001285391 NM_001285392 NM_001285393 NM_001331016 NM_004414 NM_203417 NM_203418
Consensus coding sequences : CCDS (NCBI)RCAN1
Gene ExpressionRCAN1 [ NCBI-GEO ]   RCAN1 [ EBI - ARRAY_EXPRESS ]   RCAN1 [ SEEK ]   RCAN1 [ MEM ]
Gene Expression Viewer (FireBrowse)RCAN1 [ Firebrowse - Broad ]
GenevisibleExpression of RCAN1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1827
GTEX Portal (Tissue expression)RCAN1
Human Protein AtlasENSG00000159200-RCAN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RCAN1
Human Protein Atlas [tissue]ENSG00000159200-RCAN1 [tissue]
HPRD04226
Protein Interaction databases
BioGRIDRCAN1
STRING (EMBL)RCAN1
ZODIACRCAN1
Ontologies - Pathways
Litterature
PubMed121 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRCAN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:28:32 CEST 2021

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