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RCBTB1 (RCC1 and BTB domain containing protein 1)

Identity

Alias_namesregulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
Alias_symbol (synonym)FLJ10716
CLLD7
CLLL7
Other aliasGLP
RDEOA
HGNC (Hugo) RCBTB1
LocusID (NCBI) 55213
Atlas_Id 43011
Location 13q14.2  [Link to chromosome band 13q14]
Location_base_pair Starts at 49531946 and ends at 49585583 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DCLK1 (13q13.3) / RCBTB1 (13q14.2)RCBTB1 (13q14.2) / RCBTB1 (13q14.2)DCLK1 13q13.3 / RCBTB1 13q14.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RCBTB1   18243
Cards
Entrez_Gene (NCBI)RCBTB1  55213  RCC1 and BTB domain containing protein 1
AliasesCLLD7; CLLL7; GLP; RDEOA
GeneCards (Weizmann)RCBTB1
Ensembl hg19 (Hinxton)ENSG00000136144 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136144 [Gene_View]  chr13:49531946-49585583 [Contig_View]  RCBTB1 [Vega]
ICGC DataPortalENSG00000136144
TCGA cBioPortalRCBTB1
AceView (NCBI)RCBTB1
Genatlas (Paris)RCBTB1
WikiGenes55213
SOURCE (Princeton)RCBTB1
Genetics Home Reference (NIH)RCBTB1
Genomic and cartography
GoldenPath hg38 (UCSC)RCBTB1  -     chr13:49531946-49585583 -  13q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RCBTB1  -     13q14.2   [Description]    (hg19-Feb_2009)
EnsemblRCBTB1 - 13q14.2 [CytoView hg19]  RCBTB1 - 13q14.2 [CytoView hg38]
Mapping of homologs : NCBIRCBTB1 [Mapview hg19]  RCBTB1 [Mapview hg38]
OMIM103780   607867   617175   
Gene and transcription
Genbank (Entrez)AB209222 AF334406 AI079751 AJ319660 AK001578
RefSeq transcript (Entrez)NM_018191
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RCBTB1
Cluster EST : UnigeneHs.508021 [ NCBI ]
CGAP (NCI)Hs.508021
Alternative Splicing GalleryENSG00000136144
Gene ExpressionRCBTB1 [ NCBI-GEO ]   RCBTB1 [ EBI - ARRAY_EXPRESS ]   RCBTB1 [ SEEK ]   RCBTB1 [ MEM ]
Gene Expression Viewer (FireBrowse)RCBTB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55213
GTEX Portal (Tissue expression)RCBTB1
Human Protein AtlasENSG00000136144-RCBTB1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDN9
Splice isoforms : SwissVarQ8NDN9
PhosPhoSitePlusQ8NDN9
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    RCC1_2 (PS00626)    RCC1_3 (PS50012)   
Domains : Interpro (EBI)BTB/POZ_dom    RCC1/BLIP-II    Reg_chr_condens    SKP1/BTB/POZ   
Domain families : Pfam (Sanger)BTB (PF00651)    RCC1 (PF00415)   
Domain families : Pfam (NCBI)pfam00651    pfam00415   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)RCBTB1
DMDM Disease mutations55213
Blocks (Seattle)RCBTB1
SuperfamilyQ8NDN9
Human Protein Atlas [tissue]ENSG00000136144-RCBTB1 [tissue]
Peptide AtlasQ8NDN9
HPRD09713
IPIIPI00329626   IPI00973193   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDN9
IntAct (EBI)Q8NDN9
FunCoupENSG00000136144
BioGRIDRCBTB1
STRING (EMBL)RCBTB1
ZODIACRCBTB1
Ontologies - Pathways
QuickGOQ8NDN9
Ontology : AmiGOnucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  cell cycle  covalent chromatin modification  
Ontology : EGO-EBInucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  cell cycle  covalent chromatin modification  
NDEx NetworkRCBTB1
Atlas of Cancer Signalling NetworkRCBTB1
Wikipedia pathwaysRCBTB1
Orthology - Evolution
OrthoDB55213
GeneTree (enSembl)ENSG00000136144
Phylogenetic Trees/Animal Genes : TreeFamRCBTB1
HOVERGENQ8NDN9
HOGENOMQ8NDN9
Homologs : HomoloGeneRCBTB1
Homology/Alignments : Family Browser (UCSC)RCBTB1
Gene fusions - Rearrangements
Fusion : MitelmanDCLK1/RCBTB1 [13q13.3/13q14.2]  [t(13;13)(q13;q14)]  
Fusion: TCGA_MDACCDCLK1 13q13.3 RCBTB1 13q14.2 BRCA
Tumor Fusion PortalRCBTB1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRCBTB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RCBTB1
dbVarRCBTB1
ClinVarRCBTB1
1000_GenomesRCBTB1 
Exome Variant ServerRCBTB1
ExAC (Exome Aggregation Consortium)ENSG00000136144
GNOMAD BrowserENSG00000136144
Genetic variants : HAPMAP55213
Genomic Variants (DGV)RCBTB1 [DGVbeta]
DECIPHERRCBTB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRCBTB1 
Mutations
ICGC Data PortalRCBTB1 
TCGA Data PortalRCBTB1 
Broad Tumor PortalRCBTB1
OASIS PortalRCBTB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRCBTB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRCBTB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RCBTB1
DgiDB (Drug Gene Interaction Database)RCBTB1
DoCM (Curated mutations)RCBTB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RCBTB1 (select a term)
intoGenRCBTB1
Cancer3DRCBTB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM103780    607867    617175   
Orphanet
DisGeNETRCBTB1
MedgenRCBTB1
Genetic Testing Registry RCBTB1
NextProtQ8NDN9 [Medical]
TSGene55213
GENETestsRCBTB1
Target ValidationRCBTB1
Huge Navigator RCBTB1 [HugePedia]
snp3D : Map Gene to Disease55213
BioCentury BCIQRCBTB1
ClinGenRCBTB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55213
Chemical/Pharm GKB GenePA134955699
Clinical trialRCBTB1
Miscellaneous
canSAR (ICR)RCBTB1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRCBTB1
EVEXRCBTB1
GoPubMedRCBTB1
iHOPRCBTB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:32:01 CET 2017

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