Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RCBTB2 (RCC1 and BTB domain containing protein 2)

Identity

Alias_namesCHC1L
chromosome condensation 1-like
regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
Other aliasRLG
HGNC (Hugo) RCBTB2
LocusID (NCBI) 1102
Atlas_Id 40070
Location 13q14.2  [Link to chromosome band 13q14]
Location_base_pair Starts at 49063099 and ends at 49107392 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RCBTB2 (13q14.2) / ARPC4-TTLL3 (3p25.3)RCBTB2 (13q14.2) / RB1 (13q14.2)THOC3 (5q35.2) / RCBTB2 (13q14.2)
RCBTB2 13q14.2 / RB1 13q14.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RCBTB2   1914
Cards
Entrez_Gene (NCBI)RCBTB2  1102  RCC1 and BTB domain containing protein 2
AliasesCHC1L; RLG
GeneCards (Weizmann)RCBTB2
Ensembl hg19 (Hinxton)ENSG00000136161 [Gene_View]  chr13:49063099-49107392 [Contig_View]  RCBTB2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000136161 [Gene_View]  chr13:49063099-49107392 [Contig_View]  RCBTB2 [Vega]
ICGC DataPortalENSG00000136161
TCGA cBioPortalRCBTB2
AceView (NCBI)RCBTB2
Genatlas (Paris)RCBTB2
WikiGenes1102
SOURCE (Princeton)RCBTB2
Genetics Home Reference (NIH)RCBTB2
Genomic and cartography
GoldenPath hg19 (UCSC)RCBTB2  -     chr13:49063099-49107392 -  13q14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RCBTB2  -     13q14.2   [Description]    (hg38-Dec_2013)
EnsemblRCBTB2 - 13q14.2 [CytoView hg19]  RCBTB2 - 13q14.2 [CytoView hg38]
Mapping of homologs : NCBIRCBTB2 [Mapview hg19]  RCBTB2 [Mapview hg38]
OMIM603524   
Gene and transcription
Genbank (Entrez)AB209543 AF060219 AK023010 AK122778 AK298438
RefSeq transcript (Entrez)NM_001268 NM_001286830 NM_001286831 NM_001286832
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)RCBTB2
Cluster EST : UnigeneHs.652712 [ NCBI ]
CGAP (NCI)Hs.652712
Alternative Splicing GalleryENSG00000136161
Gene ExpressionRCBTB2 [ NCBI-GEO ]   RCBTB2 [ EBI - ARRAY_EXPRESS ]   RCBTB2 [ SEEK ]   RCBTB2 [ MEM ]
Gene Expression Viewer (FireBrowse)RCBTB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1102
GTEX Portal (Tissue expression)RCBTB2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95199   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95199  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95199
Splice isoforms : SwissVarO95199
PhosPhoSitePlusO95199
Domaine pattern : Prosite (Expaxy)BTB (PS50097)    RCC1_2 (PS00626)    RCC1_3 (PS50012)   
Domains : Interpro (EBI)BTB/POZ_dom    RCC1/BLIP-II    Reg_chr_condens    SKP1/BTB/POZ   
Domain families : Pfam (Sanger)BTB (PF00651)    RCC1 (PF00415)   
Domain families : Pfam (NCBI)pfam00651    pfam00415   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)RCBTB2
DMDM Disease mutations1102
Blocks (Seattle)RCBTB2
SuperfamilyO95199
Human Protein AtlasENSG00000136161
Peptide AtlasO95199
HPRD04631
IPIIPI00941277   IPI00658195   IPI01012849   IPI00902431   IPI00908914   IPI00014593   IPI00910671   IPI00981071   
Protein Interaction databases
DIP (DOE-UCLA)O95199
IntAct (EBI)O95199
FunCoupENSG00000136161
BioGRIDRCBTB2
STRING (EMBL)RCBTB2
ZODIACRCBTB2
Ontologies - Pathways
QuickGOO95199
Ontology : AmiGORan guanyl-nucleotide exchange factor activity  protein binding  positive regulation of GTPase activity  
Ontology : EGO-EBIRan guanyl-nucleotide exchange factor activity  protein binding  positive regulation of GTPase activity  
NDEx NetworkRCBTB2
Atlas of Cancer Signalling NetworkRCBTB2
Wikipedia pathwaysRCBTB2
Orthology - Evolution
OrthoDB1102
GeneTree (enSembl)ENSG00000136161
Phylogenetic Trees/Animal Genes : TreeFamRCBTB2
HOVERGENO95199
HOGENOMO95199
Homologs : HomoloGeneRCBTB2
Homology/Alignments : Family Browser (UCSC)RCBTB2
Gene fusions - Rearrangements
Fusion : MitelmanRCBTB2/RB1 [13q14.2/13q14.2]  
Fusion: TCGARCBTB2 13q14.2 RB1 13q14.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRCBTB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RCBTB2
dbVarRCBTB2
ClinVarRCBTB2
1000_GenomesRCBTB2 
Exome Variant ServerRCBTB2
ExAC (Exome Aggregation Consortium)RCBTB2 (select the gene name)
Genetic variants : HAPMAP1102
Genomic Variants (DGV)RCBTB2 [DGVbeta]
DECIPHER (Syndromes)13:49063099-49107392  ENSG00000136161
CONAN: Copy Number AnalysisRCBTB2 
Mutations
ICGC Data PortalRCBTB2 
TCGA Data PortalRCBTB2 
Broad Tumor PortalRCBTB2
OASIS PortalRCBTB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRCBTB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRCBTB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RCBTB2
DgiDB (Drug Gene Interaction Database)RCBTB2
DoCM (Curated mutations)RCBTB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RCBTB2 (select a term)
intoGenRCBTB2
Cancer3DRCBTB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603524   
Orphanet
MedgenRCBTB2
Genetic Testing Registry RCBTB2
NextProtO95199 [Medical]
TSGene1102
GENETestsRCBTB2
Huge Navigator RCBTB2 [HugePedia]
snp3D : Map Gene to Disease1102
BioCentury BCIQRCBTB2
ClinGenRCBTB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1102
Chemical/Pharm GKB GenePA26450
Clinical trialRCBTB2
Miscellaneous
canSAR (ICR)RCBTB2 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRCBTB2
EVEXRCBTB2
GoPubMedRCBTB2
iHOPRCBTB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:24:41 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.