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RCC1L (RCC1 like)

Identity

Alias_namesWBSCR16
Williams-Beuren syndrome chromosome region 16
Other alias
HGNC (Hugo) RCC1L
LocusID (NCBI) 81554
Atlas_Id 78571
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 75056515 and ends at 75073881 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RCC1L   14948
Cards
Entrez_Gene (NCBI)RCC1L  81554  RCC1 like
AliasesWBSCR16
GeneCards (Weizmann)RCC1L
Ensembl hg19 (Hinxton)ENSG00000274523 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274523 [Gene_View]  chr7:75056515-75073881 [Contig_View]  RCC1L [Vega]
ICGC DataPortalENSG00000274523
TCGA cBioPortalRCC1L
AceView (NCBI)RCC1L
Genatlas (Paris)RCC1L
WikiGenes81554
SOURCE (Princeton)RCC1L
Genetics Home Reference (NIH)RCC1L
Genomic and cartography
GoldenPath hg38 (UCSC)RCC1L  -     chr7:75056515-75073881 -  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RCC1L  -     7q11.23   [Description]    (hg19-Feb_2009)
EnsemblRCC1L - 7q11.23 [CytoView hg19]  RCC1L - 7q11.23 [CytoView hg38]
Mapping of homologs : NCBIRCC1L [Mapview hg19]  RCC1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF410455 AI701939 AK057870 AK309117 AL136804
RefSeq transcript (Entrez)NM_001281441 NM_030798 NM_148842
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RCC1L
Cluster EST : UnigeneHs.723684 [ NCBI ]
CGAP (NCI)Hs.723684
Alternative Splicing GalleryENSG00000274523
Gene ExpressionRCC1L [ NCBI-GEO ]   RCC1L [ EBI - ARRAY_EXPRESS ]   RCC1L [ SEEK ]   RCC1L [ MEM ]
Gene Expression Viewer (FireBrowse)RCC1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81554
GTEX Portal (Tissue expression)RCC1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96I51   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96I51  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96I51
Splice isoforms : SwissVarQ96I51
PhosPhoSitePlusQ96I51
Domaine pattern : Prosite (Expaxy)RCC1_2 (PS00626)    RCC1_3 (PS50012)   
Domains : Interpro (EBI)RCC1/BLIP-II    Reg_chr_condens   
Domain families : Pfam (Sanger)RCC1 (PF00415)   
Domain families : Pfam (NCBI)pfam00415   
Conserved Domain (NCBI)RCC1L
DMDM Disease mutations81554
Blocks (Seattle)RCC1L
SuperfamilyQ96I51
Human Protein AtlasENSG00000274523
Peptide AtlasQ96I51
HPRD15654
IPIIPI00305992   IPI01018686   IPI01010788   IPI00926597   
Protein Interaction databases
DIP (DOE-UCLA)Q96I51
IntAct (EBI)Q96I51
FunCoupENSG00000274523
BioGRIDRCC1L
STRING (EMBL)RCC1L
ZODIACRCC1L
Ontologies - Pathways
QuickGOQ96I51
Ontology : AmiGORNA binding  cellular_component  mitochondrion  biological_process  
Ontology : EGO-EBIRNA binding  cellular_component  mitochondrion  biological_process  
NDEx NetworkRCC1L
Atlas of Cancer Signalling NetworkRCC1L
Wikipedia pathwaysRCC1L
Orthology - Evolution
OrthoDB81554
GeneTree (enSembl)ENSG00000274523
Phylogenetic Trees/Animal Genes : TreeFamRCC1L
HOVERGENQ96I51
HOGENOMQ96I51
Homologs : HomoloGeneRCC1L
Homology/Alignments : Family Browser (UCSC)RCC1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRCC1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RCC1L
dbVarRCC1L
ClinVarRCC1L
1000_GenomesRCC1L 
Exome Variant ServerRCC1L
ExAC (Exome Aggregation Consortium)RCC1L (select the gene name)
Genetic variants : HAPMAP81554
Genomic Variants (DGV)RCC1L [DGVbeta]
DECIPHERRCC1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRCC1L 
Mutations
ICGC Data PortalRCC1L 
TCGA Data PortalRCC1L 
Broad Tumor PortalRCC1L
OASIS PortalRCC1L [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRCC1L
BioMutasearch RCC1L
DgiDB (Drug Gene Interaction Database)RCC1L
DoCM (Curated mutations)RCC1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RCC1L (select a term)
intoGenRCC1L
Cancer3DRCC1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRCC1L
Genetic Testing Registry RCC1L
NextProtQ96I51 [Medical]
TSGene81554
GENETestsRCC1L
Target ValidationRCC1L
Huge Navigator RCC1L [HugePedia]
snp3D : Map Gene to Disease81554
BioCentury BCIQRCC1L
ClinGenRCC1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81554
Chemical/Pharm GKB GenePA37941
Clinical trialRCC1L
Miscellaneous
canSAR (ICR)RCC1L (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRCC1L
EVEXRCC1L
GoPubMedRCC1L
iHOPRCC1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:36:00 CEST 2017

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