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RCCD1 (RCC1 domain containing 1)

Identity

Other alias-
HGNC (Hugo) RCCD1
LocusID (NCBI) 91433
Atlas_Id 56902
Location 15q26.1  [Link to chromosome band 15q26]
Location_base_pair Starts at 90954876 and ends at 90963125 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PRC1 (15q26.1) / RCCD1 (15q26.1)RCCD1 (15q26.1) / BLM (15q26.1)RCCD1 (15q26.1) / PRC1 (15q26.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RCCD1   30457
Cards
Entrez_Gene (NCBI)RCCD1  91433  RCC1 domain containing 1
Aliases
GeneCards (Weizmann)RCCD1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:90954876-90963125 [Contig_View]  RCCD1 [Vega]
TCGA cBioPortalRCCD1
AceView (NCBI)RCCD1
Genatlas (Paris)RCCD1
WikiGenes91433
SOURCE (Princeton)RCCD1
Genetics Home Reference (NIH)RCCD1
Genomic and cartography
GoldenPath hg38 (UCSC)RCCD1  -     chr15:90954876-90963125 +  15q26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RCCD1  -     15q26.1   [Description]    (hg19-Feb_2009)
EnsemblRCCD1 - 15q26.1 [CytoView hg19]  RCCD1 - 15q26.1 [CytoView hg38]
Mapping of homologs : NCBIRCCD1 [Mapview hg19]  RCCD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA564459 AK054837 AK092661 AL110104 AL110105
RefSeq transcript (Entrez)NM_001017919 NM_033544
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RCCD1
Cluster EST : UnigeneHs.655895 [ NCBI ]
CGAP (NCI)Hs.655895
Gene ExpressionRCCD1 [ NCBI-GEO ]   RCCD1 [ EBI - ARRAY_EXPRESS ]   RCCD1 [ SEEK ]   RCCD1 [ MEM ]
Gene Expression Viewer (FireBrowse)RCCD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91433
GTEX Portal (Tissue expression)RCCD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NED2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NED2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NED2
Splice isoforms : SwissVarA6NED2
PhosPhoSitePlusA6NED2
Domaine pattern : Prosite (Expaxy)RCC1_2 (PS00626)    RCC1_3 (PS50012)   
Domains : Interpro (EBI)RCC1/BLIP-II    Reg_chr_condens   
Domain families : Pfam (Sanger)RCC1 (PF00415)   
Domain families : Pfam (NCBI)pfam00415   
Conserved Domain (NCBI)RCCD1
DMDM Disease mutations91433
Blocks (Seattle)RCCD1
SuperfamilyA6NED2
Peptide AtlasA6NED2
IPIIPI00399158   IPI01025962   IPI01024777   
Protein Interaction databases
DIP (DOE-UCLA)A6NED2
IntAct (EBI)A6NED2
BioGRIDRCCD1
STRING (EMBL)RCCD1
ZODIACRCCD1
Ontologies - Pathways
QuickGOA6NED2
Ontology : AmiGOcytosol  plasma membrane  
Ontology : EGO-EBIcytosol  plasma membrane  
NDEx NetworkRCCD1
Atlas of Cancer Signalling NetworkRCCD1
Wikipedia pathwaysRCCD1
Orthology - Evolution
OrthoDB91433
Phylogenetic Trees/Animal Genes : TreeFamRCCD1
HOVERGENA6NED2
HOGENOMA6NED2
Homologs : HomoloGeneRCCD1
Homology/Alignments : Family Browser (UCSC)RCCD1
Gene fusions - Rearrangements
Fusion: Tumor Portal RCCD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRCCD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RCCD1
dbVarRCCD1
ClinVarRCCD1
1000_GenomesRCCD1 
Exome Variant ServerRCCD1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP91433
Genomic Variants (DGV)RCCD1 [DGVbeta]
DECIPHERRCCD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRCCD1 
Mutations
ICGC Data PortalRCCD1 
TCGA Data PortalRCCD1 
Broad Tumor PortalRCCD1
OASIS PortalRCCD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRCCD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRCCD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RCCD1
DgiDB (Drug Gene Interaction Database)RCCD1
DoCM (Curated mutations)RCCD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RCCD1 (select a term)
intoGenRCCD1
Cancer3DRCCD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRCCD1
Genetic Testing Registry RCCD1
NextProtA6NED2 [Medical]
TSGene91433
GENETestsRCCD1
Target ValidationRCCD1
Huge Navigator RCCD1 [HugePedia]
snp3D : Map Gene to Disease91433
BioCentury BCIQRCCD1
ClinGenRCCD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91433
Chemical/Pharm GKB GenePA142671092
Clinical trialRCCD1
Miscellaneous
canSAR (ICR)RCCD1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRCCD1
EVEXRCCD1
GoPubMedRCCD1
iHOPRCCD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:08:20 CET 2017

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