Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RCE1 (Ras converting CAAX endopeptidase 1)

Identity

Alias_namesRCE1A
RCE1B
RCE1 (S. Cerevisiae) homolog, prenyl protein protease
RCE1 homolog, prenyl protein peptidase (S. cerevisiae)
RCE1 homolog, prenyl protein protease (S. cerevisiae)
Alias_symbol (synonym)hRCE1
FACE-2
FACE2
Other alias
HGNC (Hugo) RCE1
LocusID (NCBI) 9986
Atlas_Id 55737
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 66843412 and ends at 66846532 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RCE1   13721
Cards
Entrez_Gene (NCBI)RCE1  9986  Ras converting CAAX endopeptidase 1
AliasesFACE2; RCE1A; RCE1B
GeneCards (Weizmann)RCE1
Ensembl hg19 (Hinxton)ENSG00000173653 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173653 [Gene_View]  chr11:66843412-66846532 [Contig_View]  RCE1 [Vega]
ICGC DataPortalENSG00000173653
TCGA cBioPortalRCE1
AceView (NCBI)RCE1
Genatlas (Paris)RCE1
WikiGenes9986
SOURCE (Princeton)RCE1
Genetics Home Reference (NIH)RCE1
Genomic and cartography
GoldenPath hg38 (UCSC)RCE1  -     chr11:66843412-66846532 +  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RCE1  -     11q13.2   [Description]    (hg19-Feb_2009)
EnsemblRCE1 - 11q13.2 [CytoView hg19]  RCE1 - 11q13.2 [CytoView hg38]
Mapping of homologs : NCBIRCE1 [Mapview hg19]  RCE1 [Mapview hg38]
OMIM605385   
Gene and transcription
Genbank (Entrez)AF121951 AL713740 BC052622 BC093726 BC093728
RefSeq transcript (Entrez)NM_001032279 NM_005133
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RCE1
Cluster EST : UnigeneHs.654972 [ NCBI ]
CGAP (NCI)Hs.654972
Alternative Splicing GalleryENSG00000173653
Gene ExpressionRCE1 [ NCBI-GEO ]   RCE1 [ EBI - ARRAY_EXPRESS ]   RCE1 [ SEEK ]   RCE1 [ MEM ]
Gene Expression Viewer (FireBrowse)RCE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9986
GTEX Portal (Tissue expression)RCE1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y256   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y256  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y256
Splice isoforms : SwissVarQ9Y256
Catalytic activity : Enzyme3.4.22.- [ Enzyme-Expasy ]   3.4.22.-3.4.22.- [ IntEnz-EBI ]   3.4.22.- [ BRENDA ]   3.4.22.- [ KEGG ]   
PhosPhoSitePlusQ9Y256
Domains : Interpro (EBI)CAAX_protease   
Domain families : Pfam (Sanger)Abi (PF02517)   
Domain families : Pfam (NCBI)pfam02517   
Conserved Domain (NCBI)RCE1
DMDM Disease mutations9986
Blocks (Seattle)RCE1
SuperfamilyQ9Y256
Human Protein AtlasENSG00000173653
Peptide AtlasQ9Y256
HPRD07289
IPIIPI00031755   IPI01020769   IPI00651708   IPI00981508   IPI00984619   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y256
IntAct (EBI)Q9Y256
FunCoupENSG00000173653
BioGRIDRCE1
STRING (EMBL)RCE1
ZODIACRCE1
Ontologies - Pathways
QuickGOQ9Y256
Ontology : AmiGOendopeptidase activity  cysteine-type endopeptidase activity  metalloendopeptidase activity  endoplasmic reticulum membrane  cytosol  integral component of plasma membrane  proteolysis  membrane  protein deubiquitination  integral component of endoplasmic reticulum membrane  CAAX-box protein processing  
Ontology : EGO-EBIendopeptidase activity  cysteine-type endopeptidase activity  metalloendopeptidase activity  endoplasmic reticulum membrane  cytosol  integral component of plasma membrane  proteolysis  membrane  protein deubiquitination  integral component of endoplasmic reticulum membrane  CAAX-box protein processing  
Pathways : KEGGTerpenoid backbone biosynthesis   
NDEx NetworkRCE1
Atlas of Cancer Signalling NetworkRCE1
Wikipedia pathwaysRCE1
Orthology - Evolution
OrthoDB9986
GeneTree (enSembl)ENSG00000173653
Phylogenetic Trees/Animal Genes : TreeFamRCE1
HOVERGENQ9Y256
HOGENOMQ9Y256
Homologs : HomoloGeneRCE1
Homology/Alignments : Family Browser (UCSC)RCE1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRCE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RCE1
dbVarRCE1
ClinVarRCE1
1000_GenomesRCE1 
Exome Variant ServerRCE1
ExAC (Exome Aggregation Consortium)RCE1 (select the gene name)
Genetic variants : HAPMAP9986
Genomic Variants (DGV)RCE1 [DGVbeta]
DECIPHERRCE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRCE1 
Mutations
ICGC Data PortalRCE1 
TCGA Data PortalRCE1 
Broad Tumor PortalRCE1
OASIS PortalRCE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRCE1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRCE1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RCE1
DgiDB (Drug Gene Interaction Database)RCE1
DoCM (Curated mutations)RCE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RCE1 (select a term)
intoGenRCE1
Cancer3DRCE1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605385   
Orphanet
MedgenRCE1
Genetic Testing Registry RCE1
NextProtQ9Y256 [Medical]
TSGene9986
GENETestsRCE1
Huge Navigator RCE1 [HugePedia]
snp3D : Map Gene to Disease9986
BioCentury BCIQRCE1
ClinGenRCE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9986
Chemical/Pharm GKB GenePA34302
Clinical trialRCE1
Miscellaneous
canSAR (ICR)RCE1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRCE1
EVEXRCE1
GoPubMedRCE1
iHOPRCE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:34:36 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.