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RCL1 (RNA terminal phosphate cyclase like 1)

Identity

Alias_namesRNA terminal phosphate cyclase-like 1
Alias_symbol (synonym)RPCL1
RNAC
Other alias
HGNC (Hugo) RCL1
LocusID (NCBI) 10171
Atlas_Id 72558
Location 9p24.1  [Link to chromosome band 9p24]
Location_base_pair Starts at 4792834 and ends at 4861077 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AK3 (9p24.1) / RCL1 (9p24.1)FOXK1 (7p22.1) / RCL1 (9p24.1)GLIS3 (9p24.2) / RCL1 (9p24.1)
RACK1 (5q35.3) / RCL1 (9p24.1)RCL1 (9p24.1) / PLGRKT (9p24.1)AK3 RCL1
GLIS3 RCL1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RCL1   17687
Cards
Entrez_Gene (NCBI)RCL1  10171  RNA terminal phosphate cyclase like 1
AliasesRNAC; RPCL1
GeneCards (Weizmann)RCL1
Ensembl hg19 (Hinxton)ENSG00000120158 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120158 [Gene_View]  chr9:4792834-4861077 [Contig_View]  RCL1 [Vega]
ICGC DataPortalENSG00000120158
TCGA cBioPortalRCL1
AceView (NCBI)RCL1
Genatlas (Paris)RCL1
WikiGenes10171
SOURCE (Princeton)RCL1
Genetics Home Reference (NIH)RCL1
Genomic and cartography
GoldenPath hg38 (UCSC)RCL1  -     chr9:4792834-4861077 +  9p24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RCL1  -     9p24.1   [Description]    (hg19-Feb_2009)
EnsemblRCL1 - 9p24.1 [CytoView hg19]  RCL1 - 9p24.1 [CytoView hg38]
Mapping of homologs : NCBIRCL1 [Mapview hg19]  RCL1 [Mapview hg38]
OMIM611405   
Gene and transcription
Genbank (Entrez)AF067172 AF161456 AI688431 AJ276894 AK022904
RefSeq transcript (Entrez)NM_001286699 NM_001286700 NM_001286701 NM_005772
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RCL1
Cluster EST : UnigeneHs.194121 [ NCBI ]
CGAP (NCI)Hs.194121
Alternative Splicing GalleryENSG00000120158
Gene ExpressionRCL1 [ NCBI-GEO ]   RCL1 [ EBI - ARRAY_EXPRESS ]   RCL1 [ SEEK ]   RCL1 [ MEM ]
Gene Expression Viewer (FireBrowse)RCL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10171
GTEX Portal (Tissue expression)RCL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2P8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2P8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2P8
Splice isoforms : SwissVarQ9Y2P8
PhosPhoSitePlusQ9Y2P8
Domaine pattern : Prosite (Expaxy)RTC (PS01287)   
Domains : Interpro (EBI)RNA3'-term_phos_cycl_insert    RNA3'_phos_cyclase_dom    RNA3'_term_phos_cyc    RNA3'_term_phos_cyc_type_2    RNA3'_term_phos_cycl-like_CS    RNA3'P_cycl/enolpyr_Trfase_a/b   
Domain families : Pfam (Sanger)RTC (PF01137)    RTC_insert (PF05189)   
Domain families : Pfam (NCBI)pfam01137    pfam05189   
Conserved Domain (NCBI)RCL1
DMDM Disease mutations10171
Blocks (Seattle)RCL1
SuperfamilyQ9Y2P8
Human Protein AtlasENSG00000120158
Peptide AtlasQ9Y2P8
HPRD10189
IPIIPI00294229   IPI00646397   IPI00647354   IPI00477560   IPI00479685   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2P8
IntAct (EBI)Q9Y2P8
FunCoupENSG00000120158
BioGRIDRCL1
STRING (EMBL)RCL1
ZODIACRCL1
Ontologies - Pathways
QuickGOQ9Y2P8
Ontology : AmiGOendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  catalytic activity  nucleoplasm  nucleolus  rRNA processing  biological_process  
Ontology : EGO-EBIendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  catalytic activity  nucleoplasm  nucleolus  rRNA processing  biological_process  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkRCL1
Atlas of Cancer Signalling NetworkRCL1
Wikipedia pathwaysRCL1
Orthology - Evolution
OrthoDB10171
GeneTree (enSembl)ENSG00000120158
Phylogenetic Trees/Animal Genes : TreeFamRCL1
HOVERGENQ9Y2P8
HOGENOMQ9Y2P8
Homologs : HomoloGeneRCL1
Homology/Alignments : Family Browser (UCSC)RCL1
Gene fusions - Rearrangements
Fusion: TCGAAK3 RCL1
Fusion: TCGAGLIS3 RCL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRCL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RCL1
dbVarRCL1
ClinVarRCL1
1000_GenomesRCL1 
Exome Variant ServerRCL1
ExAC (Exome Aggregation Consortium)RCL1 (select the gene name)
Genetic variants : HAPMAP10171
Genomic Variants (DGV)RCL1 [DGVbeta]
DECIPHERRCL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRCL1 
Mutations
ICGC Data PortalRCL1 
TCGA Data PortalRCL1 
Broad Tumor PortalRCL1
OASIS PortalRCL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRCL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRCL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RCL1
DgiDB (Drug Gene Interaction Database)RCL1
DoCM (Curated mutations)RCL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RCL1 (select a term)
intoGenRCL1
Cancer3DRCL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611405   
Orphanet
MedgenRCL1
Genetic Testing Registry RCL1
NextProtQ9Y2P8 [Medical]
TSGene10171
GENETestsRCL1
Target ValidationRCL1
Huge Navigator RCL1 [HugePedia]
snp3D : Map Gene to Disease10171
BioCentury BCIQRCL1
ClinGenRCL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10171
Chemical/Pharm GKB GenePA134894364
Clinical trialRCL1
Miscellaneous
canSAR (ICR)RCL1 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRCL1
EVEXRCL1
GoPubMedRCL1
iHOPRCL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:00 CEST 2017

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