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RCN1 (reticulocalbin 1)

Identity

Alias_namesRCN
reticulocalbin 1
Alias_symbol (synonym)Rcal
PIG20
FLJ37041
Other aliasHEL-S-84
RCAL
HGNC (Hugo) RCN1
LocusID (NCBI) 5954
Atlas_Id 52179
Location 11p13  [Link to chromosome band 11p13]
Location_base_pair Starts at 32090931 and ends at 32105726 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RCN1 (11p13) / DNAJC24 (11p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RCN1   9934
Cards
Entrez_Gene (NCBI)RCN1  5954  reticulocalbin 1
AliasesHEL-S-84; PIG20; RCAL; RCN
GeneCards (Weizmann)RCN1
Ensembl hg19 (Hinxton)ENSG00000049449 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000049449 [Gene_View]  chr11:32090931-32105726 [Contig_View]  RCN1 [Vega]
ICGC DataPortalENSG00000049449
TCGA cBioPortalRCN1
AceView (NCBI)RCN1
Genatlas (Paris)RCN1
WikiGenes5954
SOURCE (Princeton)RCN1
Genetics Home Reference (NIH)RCN1
Genomic and cartography
GoldenPath hg38 (UCSC)RCN1  -     chr11:32090931-32105726 +  11p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RCN1  -     11p13   [Description]    (hg19-Feb_2009)
EnsemblRCN1 - 11p13 [CytoView hg19]  RCN1 - 11p13 [CytoView hg38]
Mapping of homologs : NCBIRCN1 [Mapview hg19]  RCN1 [Mapview hg38]
OMIM602735   
Gene and transcription
Genbank (Entrez)AK094360 AK126419 AK129791 AY423728 BC010120
RefSeq transcript (Entrez)NM_002901
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RCN1
Cluster EST : UnigeneHs.97887 [ NCBI ]
CGAP (NCI)Hs.97887
Alternative Splicing GalleryENSG00000049449
Gene ExpressionRCN1 [ NCBI-GEO ]   RCN1 [ EBI - ARRAY_EXPRESS ]   RCN1 [ SEEK ]   RCN1 [ MEM ]
Gene Expression Viewer (FireBrowse)RCN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5954
GTEX Portal (Tissue expression)RCN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15293   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15293  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15293
Splice isoforms : SwissVarQ15293
PhosPhoSitePlusQ15293
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)    ER_TARGET (PS00014)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    Rcn1   
Domain families : Pfam (Sanger)EF-hand_5 (PF13202)   
Domain families : Pfam (NCBI)pfam13202   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)RCN1
DMDM Disease mutations5954
Blocks (Seattle)RCN1
SuperfamilyQ15293
Human Protein AtlasENSG00000049449
Peptide AtlasQ15293
HPRD04111
IPIIPI00015842   IPI00978082   IPI00981770   IPI00978626   IPI00979335   IPI00977718   IPI00980155   IPI00976891   
Protein Interaction databases
DIP (DOE-UCLA)Q15293
IntAct (EBI)Q15293
FunCoupENSG00000049449
BioGRIDRCN1
STRING (EMBL)RCN1
ZODIACRCN1
Ontologies - Pathways
QuickGOQ15293
Ontology : AmiGOin utero embryonic development  calcium ion binding  protein binding  endoplasmic reticulum  endoplasmic reticulum lumen  camera-type eye development  
Ontology : EGO-EBIin utero embryonic development  calcium ion binding  protein binding  endoplasmic reticulum  endoplasmic reticulum lumen  camera-type eye development  
NDEx NetworkRCN1
Atlas of Cancer Signalling NetworkRCN1
Wikipedia pathwaysRCN1
Orthology - Evolution
OrthoDB5954
GeneTree (enSembl)ENSG00000049449
Phylogenetic Trees/Animal Genes : TreeFamRCN1
HOVERGENQ15293
HOGENOMQ15293
Homologs : HomoloGeneRCN1
Homology/Alignments : Family Browser (UCSC)RCN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRCN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RCN1
dbVarRCN1
ClinVarRCN1
1000_GenomesRCN1 
Exome Variant ServerRCN1
ExAC (Exome Aggregation Consortium)RCN1 (select the gene name)
Genetic variants : HAPMAP5954
Genomic Variants (DGV)RCN1 [DGVbeta]
DECIPHERRCN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRCN1 
Mutations
ICGC Data PortalRCN1 
TCGA Data PortalRCN1 
Broad Tumor PortalRCN1
OASIS PortalRCN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRCN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRCN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RCN1
DgiDB (Drug Gene Interaction Database)RCN1
DoCM (Curated mutations)RCN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RCN1 (select a term)
intoGenRCN1
Cancer3DRCN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602735   
Orphanet
MedgenRCN1
Genetic Testing Registry RCN1
NextProtQ15293 [Medical]
TSGene5954
GENETestsRCN1
Target ValidationRCN1
Huge Navigator RCN1 [HugePedia]
snp3D : Map Gene to Disease5954
BioCentury BCIQRCN1
ClinGenRCN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5954
Chemical/Pharm GKB GenePA34303
Clinical trialRCN1
Miscellaneous
canSAR (ICR)RCN1 (select the gene name)
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRCN1
EVEXRCN1
GoPubMedRCN1
iHOPRCN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Aug 1 17:12:47 CEST 2017

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