Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RCN2 (reticulocalbin 2)

Identity

Alias_namesEF-hand calcium binding domain (endoplasmic reticulum calcium-binding protein
55kD)
Alias_symbol (synonym)ERC-55
E6BP
ERC55
TCBP49
Other alias
HGNC (Hugo) RCN2
LocusID (NCBI) 5955
Atlas_Id 42077
Location 15q24.3  [Link to chromosome band 15q24]
Location_base_pair Starts at 76931621 and ends at 76950260 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RCN2 (15q24.3) / CDKN1A (6p21.2)RCN2 (15q24.3) / RCN2 (15q24.3)RCN2 (15q24.3) / WHSC1 (4p16.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RCN2   9935
Cards
Entrez_Gene (NCBI)RCN2  5955  reticulocalbin 2
AliasesE6BP; ERC-55; ERC55; TCBP49
GeneCards (Weizmann)RCN2
Ensembl hg19 (Hinxton)ENSG00000117906 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117906 [Gene_View]  chr15:76931621-76950260 [Contig_View]  RCN2 [Vega]
ICGC DataPortalENSG00000117906
TCGA cBioPortalRCN2
AceView (NCBI)RCN2
Genatlas (Paris)RCN2
WikiGenes5955
SOURCE (Princeton)RCN2
Genetics Home Reference (NIH)RCN2
Genomic and cartography
GoldenPath hg38 (UCSC)RCN2  -     chr15:76931621-76950260 +  15q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RCN2  -     15q24.3   [Description]    (hg19-Feb_2009)
EnsemblRCN2 - 15q24.3 [CytoView hg19]  RCN2 - 15q24.3 [CytoView hg38]
Mapping of homologs : NCBIRCN2 [Mapview hg19]  RCN2 [Mapview hg38]
OMIM602584   
Gene and transcription
Genbank (Entrez)AK126522 AK313833 AL110102 AV711990 BC004892
RefSeq transcript (Entrez)NM_001271837 NM_002902
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RCN2
Cluster EST : UnigeneHs.79088 [ NCBI ]
CGAP (NCI)Hs.79088
Alternative Splicing GalleryENSG00000117906
Gene ExpressionRCN2 [ NCBI-GEO ]   RCN2 [ EBI - ARRAY_EXPRESS ]   RCN2 [ SEEK ]   RCN2 [ MEM ]
Gene Expression Viewer (FireBrowse)RCN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5955
GTEX Portal (Tissue expression)RCN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14257   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14257  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14257
Splice isoforms : SwissVarQ14257
PhosPhoSitePlusQ14257
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)    ER_TARGET (PS00014)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_5 (PF13202)    EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13202    pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)RCN2
DMDM Disease mutations5955
Blocks (Seattle)RCN2
SuperfamilyQ14257
Human Protein AtlasENSG00000117906
Peptide AtlasQ14257
HPRD03993
IPIIPI00029628   IPI00790214   IPI00853306   
Protein Interaction databases
DIP (DOE-UCLA)Q14257
IntAct (EBI)Q14257
FunCoupENSG00000117906
BioGRIDRCN2
STRING (EMBL)RCN2
ZODIACRCN2
Ontologies - Pathways
QuickGOQ14257
Ontology : AmiGOcalcium ion binding  protein binding  nucleolus  endoplasmic reticulum  endoplasmic reticulum lumen  
Ontology : EGO-EBIcalcium ion binding  protein binding  nucleolus  endoplasmic reticulum  endoplasmic reticulum lumen  
NDEx NetworkRCN2
Atlas of Cancer Signalling NetworkRCN2
Wikipedia pathwaysRCN2
Orthology - Evolution
OrthoDB5955
GeneTree (enSembl)ENSG00000117906
Phylogenetic Trees/Animal Genes : TreeFamRCN2
HOVERGENQ14257
HOGENOMQ14257
Homologs : HomoloGeneRCN2
Homology/Alignments : Family Browser (UCSC)RCN2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRCN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RCN2
dbVarRCN2
ClinVarRCN2
1000_GenomesRCN2 
Exome Variant ServerRCN2
ExAC (Exome Aggregation Consortium)RCN2 (select the gene name)
Genetic variants : HAPMAP5955
Genomic Variants (DGV)RCN2 [DGVbeta]
DECIPHERRCN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRCN2 
Mutations
ICGC Data PortalRCN2 
TCGA Data PortalRCN2 
Broad Tumor PortalRCN2
OASIS PortalRCN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRCN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRCN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RCN2
DgiDB (Drug Gene Interaction Database)RCN2
DoCM (Curated mutations)RCN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RCN2 (select a term)
intoGenRCN2
Cancer3DRCN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602584   
Orphanet
MedgenRCN2
Genetic Testing Registry RCN2
NextProtQ14257 [Medical]
TSGene5955
GENETestsRCN2
Target ValidationRCN2
Huge Navigator RCN2 [HugePedia]
snp3D : Map Gene to Disease5955
BioCentury BCIQRCN2
ClinGenRCN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5955
Chemical/Pharm GKB GenePA34304
Clinical trialRCN2
Miscellaneous
canSAR (ICR)RCN2 (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRCN2
EVEXRCN2
GoPubMedRCN2
iHOPRCN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:28:25 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.