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RCN3 (reticulocalbin 3)

Identity

Alias_namesreticulocalbin 3, EF-hand calcium binding domain
Alias_symbol (synonym)RLP49
Other alias
HGNC (Hugo) RCN3
LocusID (NCBI) 57333
Atlas_Id 72559
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49527618 and ends at 49543633 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RCN3 (19q13.33) / LOC100288637 (15q13.2)RCN3 (19q13.33) / PAPPA (9q33.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RCN3   21145
Cards
Entrez_Gene (NCBI)RCN3  57333  reticulocalbin 3
AliasesRLP49
GeneCards (Weizmann)RCN3
Ensembl hg19 (Hinxton)ENSG00000142552 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142552 [Gene_View]  chr19:49527618-49543633 [Contig_View]  RCN3 [Vega]
ICGC DataPortalENSG00000142552
TCGA cBioPortalRCN3
AceView (NCBI)RCN3
Genatlas (Paris)RCN3
WikiGenes57333
SOURCE (Princeton)RCN3
Genetics Home Reference (NIH)RCN3
Genomic and cartography
GoldenPath hg38 (UCSC)RCN3  -     chr19:49527618-49543633 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RCN3  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblRCN3 - 19q13.33 [CytoView hg19]  RCN3 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIRCN3 [Mapview hg19]  RCN3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF183423 AY195859 AY358423 BC013436
RefSeq transcript (Entrez)NM_020650
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RCN3
Cluster EST : UnigeneHs.567550 [ NCBI ]
CGAP (NCI)Hs.567550
Alternative Splicing GalleryENSG00000142552
Gene ExpressionRCN3 [ NCBI-GEO ]   RCN3 [ EBI - ARRAY_EXPRESS ]   RCN3 [ SEEK ]   RCN3 [ MEM ]
Gene Expression Viewer (FireBrowse)RCN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57333
GTEX Portal (Tissue expression)RCN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96D15   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96D15  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96D15
Splice isoforms : SwissVarQ96D15
PhosPhoSitePlusQ96D15
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)    ER_TARGET (PS00014)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_5 (PF13202)    EF-hand_8 (PF13833)   
Domain families : Pfam (NCBI)pfam13202    pfam13833   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)RCN3
DMDM Disease mutations57333
Blocks (Seattle)RCN3
SuperfamilyQ96D15
Human Protein AtlasENSG00000142552
Peptide AtlasQ96D15
HPRD17962
IPIIPI00101037   
Protein Interaction databases
DIP (DOE-UCLA)Q96D15
IntAct (EBI)Q96D15
FunCoupENSG00000142552
BioGRIDRCN3
STRING (EMBL)RCN3
ZODIACRCN3
Ontologies - Pathways
QuickGOQ96D15
Ontology : AmiGOcalcium ion binding  protein binding  endoplasmic reticulum lumen  
Ontology : EGO-EBIcalcium ion binding  protein binding  endoplasmic reticulum lumen  
NDEx NetworkRCN3
Atlas of Cancer Signalling NetworkRCN3
Wikipedia pathwaysRCN3
Orthology - Evolution
OrthoDB57333
GeneTree (enSembl)ENSG00000142552
Phylogenetic Trees/Animal Genes : TreeFamRCN3
HOVERGENQ96D15
HOGENOMQ96D15
Homologs : HomoloGeneRCN3
Homology/Alignments : Family Browser (UCSC)RCN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRCN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RCN3
dbVarRCN3
ClinVarRCN3
1000_GenomesRCN3 
Exome Variant ServerRCN3
ExAC (Exome Aggregation Consortium)RCN3 (select the gene name)
Genetic variants : HAPMAP57333
Genomic Variants (DGV)RCN3 [DGVbeta]
DECIPHERRCN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRCN3 
Mutations
ICGC Data PortalRCN3 
TCGA Data PortalRCN3 
Broad Tumor PortalRCN3
OASIS PortalRCN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRCN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRCN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RCN3
DgiDB (Drug Gene Interaction Database)RCN3
DoCM (Curated mutations)RCN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RCN3 (select a term)
intoGenRCN3
Cancer3DRCN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRCN3
Genetic Testing Registry RCN3
NextProtQ96D15 [Medical]
TSGene57333
GENETestsRCN3
Target ValidationRCN3
Huge Navigator RCN3 [HugePedia]
snp3D : Map Gene to Disease57333
BioCentury BCIQRCN3
ClinGenRCN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57333
Chemical/Pharm GKB GenePA134880380
Clinical trialRCN3
Miscellaneous
canSAR (ICR)RCN3 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRCN3
EVEXRCN3
GoPubMedRCN3
iHOPRCN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:38:26 CEST 2017

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