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RCOR2 (REST corepressor 2)

Identity

Other alias-
HGNC (Hugo) RCOR2
LocusID (NCBI) 283248
Atlas_Id 72560
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 63678693 and ends at 63684316 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RCOR2 (11q13.1) / RCOR2 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RCOR2   27455
Cards
Entrez_Gene (NCBI)RCOR2  283248  REST corepressor 2
Aliases
GeneCards (Weizmann)RCOR2
Ensembl hg19 (Hinxton)ENSG00000167771 [Gene_View]  chr11:63678693-63684316 [Contig_View]  RCOR2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167771 [Gene_View]  chr11:63678693-63684316 [Contig_View]  RCOR2 [Vega]
ICGC DataPortalENSG00000167771
TCGA cBioPortalRCOR2
AceView (NCBI)RCOR2
Genatlas (Paris)RCOR2
WikiGenes283248
SOURCE (Princeton)RCOR2
Genetics Home Reference (NIH)RCOR2
Genomic and cartography
GoldenPath hg19 (UCSC)RCOR2  -     chr11:63678693-63684316 -  11q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RCOR2  -     11q13.1   [Description]    (hg38-Dec_2013)
EnsemblRCOR2 - 11q13.1 [CytoView hg19]  RCOR2 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBIRCOR2 [Mapview hg19]  RCOR2 [Mapview hg38]
OMIM616019   
Gene and transcription
Genbank (Entrez)AB593132 BC010608 BC023587 BM678625
RefSeq transcript (Entrez)NM_173587
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)RCOR2
Cluster EST : UnigeneHs.98788 [ NCBI ]
CGAP (NCI)Hs.98788
Alternative Splicing GalleryENSG00000167771
Gene ExpressionRCOR2 [ NCBI-GEO ]   RCOR2 [ EBI - ARRAY_EXPRESS ]   RCOR2 [ SEEK ]   RCOR2 [ MEM ]
Gene Expression Viewer (FireBrowse)RCOR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283248
GTEX Portal (Tissue expression)RCOR2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZ40   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZ40  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZ40
Splice isoforms : SwissVarQ8IZ40
PhosPhoSitePlusQ8IZ40
Domaine pattern : Prosite (Expaxy)ELM2 (PS51156)    SANT (PS51293)   
Domains : Interpro (EBI)ELM2_dom    Homeodomain-like    SANT/Myb    SANT_dom   
Domain families : Pfam (Sanger)ELM2 (PF01448)    Myb_DNA-binding (PF00249)   
Domain families : Pfam (NCBI)pfam01448    pfam00249   
Domain families : Smart (EMBL)SANT (SM00717)  
Conserved Domain (NCBI)RCOR2
DMDM Disease mutations283248
Blocks (Seattle)RCOR2
SuperfamilyQ8IZ40
Human Protein AtlasENSG00000167771
Peptide AtlasQ8IZ40
HPRD15234
IPIIPI00217874   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZ40
IntAct (EBI)Q8IZ40
FunCoupENSG00000167771
BioGRIDRCOR2
STRING (EMBL)RCOR2
ZODIACRCOR2
Ontologies - Pathways
QuickGOQ8IZ40
Ontology : AmiGOchromatin  DNA binding  chromatin binding  sequence-specific DNA binding transcription factor activity  transcription corepressor activity  nucleus  transcription factor complex  transcription, DNA-templated  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIchromatin  DNA binding  chromatin binding  sequence-specific DNA binding transcription factor activity  transcription corepressor activity  nucleus  transcription factor complex  transcription, DNA-templated  negative regulation of transcription, DNA-templated  
NDEx NetworkRCOR2
Atlas of Cancer Signalling NetworkRCOR2
Wikipedia pathwaysRCOR2
Orthology - Evolution
OrthoDB283248
GeneTree (enSembl)ENSG00000167771
Phylogenetic Trees/Animal Genes : TreeFamRCOR2
HOVERGENQ8IZ40
HOGENOMQ8IZ40
Homologs : HomoloGeneRCOR2
Homology/Alignments : Family Browser (UCSC)RCOR2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRCOR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RCOR2
dbVarRCOR2
ClinVarRCOR2
1000_GenomesRCOR2 
Exome Variant ServerRCOR2
ExAC (Exome Aggregation Consortium)RCOR2 (select the gene name)
Genetic variants : HAPMAP283248
Genomic Variants (DGV)RCOR2 [DGVbeta]
DECIPHER (Syndromes)11:63678693-63684316  ENSG00000167771
CONAN: Copy Number AnalysisRCOR2 
Mutations
ICGC Data PortalRCOR2 
TCGA Data PortalRCOR2 
Broad Tumor PortalRCOR2
OASIS PortalRCOR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRCOR2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRCOR2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RCOR2
DgiDB (Drug Gene Interaction Database)RCOR2
DoCM (Curated mutations)RCOR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RCOR2 (select a term)
intoGenRCOR2
Cancer3DRCOR2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616019   
Orphanet
MedgenRCOR2
Genetic Testing Registry RCOR2
NextProtQ8IZ40 [Medical]
TSGene283248
GENETestsRCOR2
Huge Navigator RCOR2 [HugePedia]
snp3D : Map Gene to Disease283248
BioCentury BCIQRCOR2
ClinGenRCOR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283248
Chemical/Pharm GKB GenePA134876257
Clinical trialRCOR2
Miscellaneous
canSAR (ICR)RCOR2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRCOR2
EVEXRCOR2
GoPubMedRCOR2
iHOPRCOR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:40:48 CET 2017

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