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RCOR3 (REST corepressor 3)

Identity

Alias_symbol (synonym)FLJ10876
Other alias-
HGNC (Hugo) RCOR3
LocusID (NCBI) 55758
Atlas_Id 42078
Location 1q32.2  [Link to chromosome band 1q32]
Location_base_pair Starts at 211259277 and ends at 211316383 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DENND1B (1q31.3) / RCOR3 (1q32.2)RCOR3 (1q32.2) / FRMPD1 (9p13.2)RCOR3 (1q32.2) / RPS6KC1 (1q32.3)
TMEM206 (1q32.3) / RCOR3 (1q32.2)DENND1B 1q31.3 / RCOR3 1q32.2RCOR3 1q32.2 / RPS6KC1 1q32.3
TMEM206 1q32.3 / RCOR3 1q32.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RCOR3   25594
Cards
Entrez_Gene (NCBI)RCOR3  55758  REST corepressor 3
Aliases
GeneCards (Weizmann)RCOR3
Ensembl hg19 (Hinxton)ENSG00000117625 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117625 [Gene_View]  chr1:211259277-211316383 [Contig_View]  RCOR3 [Vega]
ICGC DataPortalENSG00000117625
TCGA cBioPortalRCOR3
AceView (NCBI)RCOR3
Genatlas (Paris)RCOR3
WikiGenes55758
SOURCE (Princeton)RCOR3
Genetics Home Reference (NIH)RCOR3
Genomic and cartography
GoldenPath hg38 (UCSC)RCOR3  -     chr1:211259277-211316383 +  1q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RCOR3  -     1q32.2   [Description]    (hg19-Feb_2009)
EnsemblRCOR3 - 1q32.2 [CytoView hg19]  RCOR3 - 1q32.2 [CytoView hg38]
Mapping of homologs : NCBIRCOR3 [Mapview hg19]  RCOR3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA831517 AB037764 AI380424 AK001738 AK057001
RefSeq transcript (Entrez)NM_001136223 NM_001136224 NM_001136225 NM_001350069 NM_001350070 NM_018254
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RCOR3
Cluster EST : UnigeneHs.716709 [ NCBI ]
CGAP (NCI)Hs.716709
Alternative Splicing GalleryENSG00000117625
Gene ExpressionRCOR3 [ NCBI-GEO ]   RCOR3 [ EBI - ARRAY_EXPRESS ]   RCOR3 [ SEEK ]   RCOR3 [ MEM ]
Gene Expression Viewer (FireBrowse)RCOR3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55758
GTEX Portal (Tissue expression)RCOR3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2K3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2K3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2K3
Splice isoforms : SwissVarQ9P2K3
PhosPhoSitePlusQ9P2K3
Domaine pattern : Prosite (Expaxy)ELM2 (PS51156)    SANT (PS51293)   
Domains : Interpro (EBI)ELM2_dom    Homeobox-like    SANT/Myb    SANT_dom   
Domain families : Pfam (Sanger)ELM2 (PF01448)    Myb_DNA-binding (PF00249)   
Domain families : Pfam (NCBI)pfam01448    pfam00249   
Domain families : Smart (EMBL)ELM2 (SM01189)  SANT (SM00717)  
Conserved Domain (NCBI)RCOR3
DMDM Disease mutations55758
Blocks (Seattle)RCOR3
PDB (SRS)4CZZ   
PDB (PDBSum)4CZZ   
PDB (IMB)4CZZ   
PDB (RSDB)4CZZ   
Structural Biology KnowledgeBase4CZZ   
SCOP (Structural Classification of Proteins)4CZZ   
CATH (Classification of proteins structures)4CZZ   
SuperfamilyQ9P2K3
Human Protein AtlasENSG00000117625
Peptide AtlasQ9P2K3
HPRD08338
IPIIPI00903300   IPI00164550   IPI00914887   IPI00914919   IPI00975952   IPI00985346   IPI00909804   IPI00984231   IPI00977629   IPI00981927   IPI00984874   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2K3
IntAct (EBI)Q9P2K3
FunCoupENSG00000117625
BioGRIDRCOR3
STRING (EMBL)RCOR3
ZODIACRCOR3
Ontologies - Pathways
QuickGOQ9P2K3
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  transcription factor activity, sequence-specific DNA binding  transcription corepressor activity  protein binding  nucleus  transcription factor complex  transcription, DNA-templated  transcription factor binding  transcriptional repressor complex  enzyme binding  transcription regulatory region DNA binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  transcription factor activity, sequence-specific DNA binding  transcription corepressor activity  protein binding  nucleus  transcription factor complex  transcription, DNA-templated  transcription factor binding  transcriptional repressor complex  enzyme binding  transcription regulatory region DNA binding  
NDEx NetworkRCOR3
Atlas of Cancer Signalling NetworkRCOR3
Wikipedia pathwaysRCOR3
Orthology - Evolution
OrthoDB55758
GeneTree (enSembl)ENSG00000117625
Phylogenetic Trees/Animal Genes : TreeFamRCOR3
HOVERGENQ9P2K3
HOGENOMQ9P2K3
Homologs : HomoloGeneRCOR3
Homology/Alignments : Family Browser (UCSC)RCOR3
Gene fusions - Rearrangements
Fusion : MitelmanDENND1B/RCOR3 [1q31.3/1q32.2]  [t(1;1)(q31;q32)]  
Fusion : MitelmanRCOR3/RPS6KC1 [1q32.2/1q32.3]  [t(1;1)(q32;q32)]  
Fusion : MitelmanTMEM206/RCOR3 [1q32.3/1q32.2]  [t(1;1)(q32;q32)]  
Fusion: TCGADENND1B 1q31.3 RCOR3 1q32.2 LUAD
Fusion: TCGARCOR3 1q32.2 RPS6KC1 1q32.3 PRAD
Fusion: TCGATMEM206 1q32.3 RCOR3 1q32.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRCOR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RCOR3
dbVarRCOR3
ClinVarRCOR3
1000_GenomesRCOR3 
Exome Variant ServerRCOR3
ExAC (Exome Aggregation Consortium)RCOR3 (select the gene name)
Genetic variants : HAPMAP55758
Genomic Variants (DGV)RCOR3 [DGVbeta]
DECIPHERRCOR3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRCOR3 
Mutations
ICGC Data PortalRCOR3 
TCGA Data PortalRCOR3 
Broad Tumor PortalRCOR3
OASIS PortalRCOR3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRCOR3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRCOR3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RCOR3
DgiDB (Drug Gene Interaction Database)RCOR3
DoCM (Curated mutations)RCOR3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RCOR3 (select a term)
intoGenRCOR3
Cancer3DRCOR3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRCOR3
Genetic Testing Registry RCOR3
NextProtQ9P2K3 [Medical]
TSGene55758
GENETestsRCOR3
Target ValidationRCOR3
Huge Navigator RCOR3 [HugePedia]
snp3D : Map Gene to Disease55758
BioCentury BCIQRCOR3
ClinGenRCOR3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55758
Chemical/Pharm GKB GenePA134917623
Clinical trialRCOR3
Miscellaneous
canSAR (ICR)RCOR3 (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRCOR3
EVEXRCOR3
GoPubMedRCOR3
iHOPRCOR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:52:54 CEST 2017

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