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RCSD1 (RCSD domain containing 1)

Identity

Alias_symbol (synonym)MK2S4
MGC21854
CapZIP
Other aliasCAPZIP
HGNC (Hugo) RCSD1
LocusID (NCBI) 92241
Atlas_Id 49790
Location 1q24.2  [Link to chromosome band 1q24]
Location_base_pair Starts at 167630193 and ends at 167708696 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATP1B1 (1q24.2) / RCSD1 (1q24.2)RCSD1 (1q24.2) / ABL1 (9q34.12)ATP1B1 1q24.2 / RCSD1 1q24.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(1;9)(q24;q34) RCSD1/ABL1


External links

Nomenclature
HGNC (Hugo)RCSD1   28310
Cards
Entrez_Gene (NCBI)RCSD1  92241  RCSD domain containing 1
AliasesCAPZIP; MK2S4
GeneCards (Weizmann)RCSD1
Ensembl hg19 (Hinxton)ENSG00000198771 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198771 [Gene_View]  chr1:167630193-167708696 [Contig_View]  RCSD1 [Vega]
ICGC DataPortalENSG00000198771
TCGA cBioPortalRCSD1
AceView (NCBI)RCSD1
Genatlas (Paris)RCSD1
WikiGenes92241
SOURCE (Princeton)RCSD1
Genetics Home Reference (NIH)RCSD1
Genomic and cartography
GoldenPath hg38 (UCSC)RCSD1  -     chr1:167630193-167708696 +  1q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RCSD1  -     1q24.2   [Description]    (hg19-Feb_2009)
EnsemblRCSD1 - 1q24.2 [CytoView hg19]  RCSD1 - 1q24.2 [CytoView hg38]
Mapping of homologs : NCBIRCSD1 [Mapview hg19]  RCSD1 [Mapview hg38]
OMIM610579   
Gene and transcription
Genbank (Entrez)AF545852 AK025425 AK092681 AK124221 AK130798
RefSeq transcript (Entrez)NM_001322923 NM_001322924 NM_052862
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RCSD1
Cluster EST : UnigeneHs.668429 [ NCBI ]
CGAP (NCI)Hs.668429
Alternative Splicing GalleryENSG00000198771
Gene ExpressionRCSD1 [ NCBI-GEO ]   RCSD1 [ EBI - ARRAY_EXPRESS ]   RCSD1 [ SEEK ]   RCSD1 [ MEM ]
Gene Expression Viewer (FireBrowse)RCSD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92241
GTEX Portal (Tissue expression)RCSD1
Human Protein AtlasENSG00000198771-RCSD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6JBY9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6JBY9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6JBY9
Splice isoforms : SwissVarQ6JBY9
PhosPhoSitePlusQ6JBY9
Domains : Interpro (EBI)FAM21/CAPZIP    RCSD   
Domain families : Pfam (Sanger)CAP-ZIP_m (PF15255)    RCSD (PF05177)   
Domain families : Pfam (NCBI)pfam15255    pfam05177   
Conserved Domain (NCBI)RCSD1
DMDM Disease mutations92241
Blocks (Seattle)RCSD1
SuperfamilyQ6JBY9
Human Protein Atlas [tissue]ENSG00000198771-RCSD1 [tissue]
Peptide AtlasQ6JBY9
HPRD10077
IPIIPI00017659   IPI00940120   IPI00844315   
Protein Interaction databases
DIP (DOE-UCLA)Q6JBY9
IntAct (EBI)Q6JBY9
FunCoupENSG00000198771
BioGRIDRCSD1
STRING (EMBL)RCSD1
ZODIACRCSD1
Ontologies - Pathways
QuickGOQ6JBY9
Ontology : AmiGOskeletal muscle contraction  actin filament  actin filament binding  cellular hyperosmotic response  
Ontology : EGO-EBIskeletal muscle contraction  actin filament  actin filament binding  cellular hyperosmotic response  
NDEx NetworkRCSD1
Atlas of Cancer Signalling NetworkRCSD1
Wikipedia pathwaysRCSD1
Orthology - Evolution
OrthoDB92241
GeneTree (enSembl)ENSG00000198771
Phylogenetic Trees/Animal Genes : TreeFamRCSD1
HOVERGENQ6JBY9
HOGENOMQ6JBY9
Homologs : HomoloGeneRCSD1
Homology/Alignments : Family Browser (UCSC)RCSD1
Gene fusions - Rearrangements
Fusion : MitelmanATP1B1/RCSD1 [1q24.2/1q24.2]  [t(1;1)(q24;q24)]  
Fusion : MitelmanRCSD1/ABL1 [1q24.2/9q34.12]  [t(1;9)(q24;q34)]  
Fusion: TCGAATP1B1 1q24.2 RCSD1 1q24.2 LUAD
Fusion: Tumor Portal RCSD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRCSD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RCSD1
dbVarRCSD1
ClinVarRCSD1
1000_GenomesRCSD1 
Exome Variant ServerRCSD1
ExAC (Exome Aggregation Consortium)ENSG00000198771
GNOMAD BrowserENSG00000198771
Genetic variants : HAPMAP92241
Genomic Variants (DGV)RCSD1 [DGVbeta]
DECIPHERRCSD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRCSD1 
Mutations
ICGC Data PortalRCSD1 
TCGA Data PortalRCSD1 
Broad Tumor PortalRCSD1
OASIS PortalRCSD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRCSD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRCSD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RCSD1
DgiDB (Drug Gene Interaction Database)RCSD1
DoCM (Curated mutations)RCSD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RCSD1 (select a term)
intoGenRCSD1
Cancer3DRCSD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610579   
Orphanet
MedgenRCSD1
Genetic Testing Registry RCSD1
NextProtQ6JBY9 [Medical]
TSGene92241
GENETestsRCSD1
Target ValidationRCSD1
Huge Navigator RCSD1 [HugePedia]
snp3D : Map Gene to Disease92241
BioCentury BCIQRCSD1
ClinGenRCSD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92241
Chemical/Pharm GKB GenePA142671088
Clinical trialRCSD1
Miscellaneous
canSAR (ICR)RCSD1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRCSD1
EVEXRCSD1
GoPubMedRCSD1
iHOPRCSD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 13:08:21 CET 2017

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