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RCVRN (recoverin)

Identity

Alias_namesRCV1
Other alias
HGNC (Hugo) RCVRN
LocusID (NCBI) 5957
Atlas_Id 42079
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 9897710 and ends at 9905367 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MALAT1 (11q13.1) / RCVRN (17p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RCVRN   9937
Cards
Entrez_Gene (NCBI)RCVRN  5957  recoverin
AliasesRCV1
GeneCards (Weizmann)RCVRN
Ensembl hg19 (Hinxton)ENSG00000109047 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109047 [Gene_View]  chr17:9897710-9905367 [Contig_View]  RCVRN [Vega]
ICGC DataPortalENSG00000109047
TCGA cBioPortalRCVRN
AceView (NCBI)RCVRN
Genatlas (Paris)RCVRN
WikiGenes5957
SOURCE (Princeton)RCVRN
Genetics Home Reference (NIH)RCVRN
Genomic and cartography
GoldenPath hg38 (UCSC)RCVRN  -     chr17:9897710-9905367 -  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RCVRN  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblRCVRN - 17p13.1 [CytoView hg19]  RCVRN - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIRCVRN [Mapview hg19]  RCVRN [Mapview hg38]
OMIM179618   
Gene and transcription
Genbank (Entrez)AB001838 AB593156 AK314129 BC001720 BT009838
RefSeq transcript (Entrez)NM_002903
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RCVRN
Cluster EST : UnigeneHs.80539 [ NCBI ]
CGAP (NCI)Hs.80539
Alternative Splicing GalleryENSG00000109047
Gene ExpressionRCVRN [ NCBI-GEO ]   RCVRN [ EBI - ARRAY_EXPRESS ]   RCVRN [ SEEK ]   RCVRN [ MEM ]
Gene Expression Viewer (FireBrowse)RCVRN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5957
GTEX Portal (Tissue expression)RCVRN
Human Protein AtlasENSG00000109047-RCVRN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP35243   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP35243  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP35243
Splice isoforms : SwissVarP35243
PhosPhoSitePlusP35243
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)    EF-hand_8 (PF13833)   
Domain families : Pfam (NCBI)pfam13499    pfam13833   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)RCVRN
DMDM Disease mutations5957
Blocks (Seattle)RCVRN
PDB (SRS)2D8N   
PDB (PDBSum)2D8N   
PDB (IMB)2D8N   
PDB (RSDB)2D8N   
Structural Biology KnowledgeBase2D8N   
SCOP (Structural Classification of Proteins)2D8N   
CATH (Classification of proteins structures)2D8N   
SuperfamilyP35243
Human Protein Atlas [tissue]ENSG00000109047-RCVRN [tissue]
Peptide AtlasP35243
HPRD01558
IPIIPI00219720   
Protein Interaction databases
DIP (DOE-UCLA)P35243
IntAct (EBI)P35243
FunCoupENSG00000109047
BioGRIDRCVRN
STRING (EMBL)RCVRN
ZODIACRCVRN
Ontologies - Pathways
QuickGOP35243
Ontology : AmiGOcalcium ion binding  signal transduction  visual perception  phototransduction  calcium sensitive guanylate cyclase activator activity  dendrite  positive regulation of guanylate cyclase activity  regulation of calcium ion transport  
Ontology : EGO-EBIcalcium ion binding  signal transduction  visual perception  phototransduction  calcium sensitive guanylate cyclase activator activity  dendrite  positive regulation of guanylate cyclase activity  regulation of calcium ion transport  
Pathways : BIOCARTAVisual Signal Transduction [Genes]   
Pathways : KEGGPhototransduction   
NDEx NetworkRCVRN
Atlas of Cancer Signalling NetworkRCVRN
Wikipedia pathwaysRCVRN
Orthology - Evolution
OrthoDB5957
GeneTree (enSembl)ENSG00000109047
Phylogenetic Trees/Animal Genes : TreeFamRCVRN
HOVERGENP35243
HOGENOMP35243
Homologs : HomoloGeneRCVRN
Homology/Alignments : Family Browser (UCSC)RCVRN
Gene fusions - Rearrangements
Tumor Fusion PortalRCVRN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRCVRN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RCVRN
dbVarRCVRN
ClinVarRCVRN
1000_GenomesRCVRN 
Exome Variant ServerRCVRN
ExAC (Exome Aggregation Consortium)ENSG00000109047
GNOMAD BrowserENSG00000109047
Genetic variants : HAPMAP5957
Genomic Variants (DGV)RCVRN [DGVbeta]
DECIPHERRCVRN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRCVRN 
Mutations
ICGC Data PortalRCVRN 
TCGA Data PortalRCVRN 
Broad Tumor PortalRCVRN
OASIS PortalRCVRN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRCVRN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRCVRN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RCVRN
DgiDB (Drug Gene Interaction Database)RCVRN
DoCM (Curated mutations)RCVRN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RCVRN (select a term)
intoGenRCVRN
Cancer3DRCVRN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM179618   
Orphanet
DisGeNETRCVRN
MedgenRCVRN
Genetic Testing Registry RCVRN
NextProtP35243 [Medical]
TSGene5957
GENETestsRCVRN
Target ValidationRCVRN
Huge Navigator RCVRN [HugePedia]
snp3D : Map Gene to Disease5957
BioCentury BCIQRCVRN
ClinGenRCVRN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5957
Chemical/Pharm GKB GenePA162400987
Clinical trialRCVRN
Miscellaneous
canSAR (ICR)RCVRN (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRCVRN
EVEXRCVRN
GoPubMedRCVRN
iHOPRCVRN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:32:03 CET 2017

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