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RD3L (retinal degeneration 3-like)

Identity

Alias_namesTDRD9-AS1
Alias_symbol (synonym)TDRD9AS1
Other alias
HGNC (Hugo) RD3L
LocusID (NCBI) 647286
Atlas_Id 72562
Location 14q32.33  [Link to chromosome band 14q32]
Location_base_pair Starts at 103940426 and ends at 103942308 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RD3L   40912
Cards
Entrez_Gene (NCBI)RD3L  647286  retinal degeneration 3-like
AliasesTDRD9-AS1; TDRD9AS1
GeneCards (Weizmann)RD3L
Ensembl hg19 (Hinxton)ENSG00000227729 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000227729 [Gene_View]  chr14:103940426-103942308 [Contig_View]  RD3L [Vega]
ICGC DataPortalENSG00000227729
TCGA cBioPortalRD3L
AceView (NCBI)RD3L
Genatlas (Paris)RD3L
WikiGenes647286
SOURCE (Princeton)RD3L
Genetics Home Reference (NIH)RD3L
Genomic and cartography
GoldenPath hg38 (UCSC)RD3L  -     chr14:103940426-103942308 -  14q32.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RD3L  -     14q32.33   [Description]    (hg19-Feb_2009)
EnsemblRD3L - 14q32.33 [CytoView hg19]  RD3L - 14q32.33 [CytoView hg38]
Mapping of homologs : NCBIRD3L [Mapview hg19]  RD3L [Mapview hg38]
Gene and transcription
Genbank (Entrez)BQ184214 BQ185906 BX117646
RefSeq transcript (Entrez)NM_001257268
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RD3L
Cluster EST : UnigeneHs.632325 [ NCBI ]
CGAP (NCI)Hs.632325
Alternative Splicing GalleryENSG00000227729
Gene ExpressionRD3L [ NCBI-GEO ]   RD3L [ EBI - ARRAY_EXPRESS ]   RD3L [ SEEK ]   RD3L [ MEM ]
Gene Expression Viewer (FireBrowse)RD3L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)647286
GTEX Portal (Tissue expression)RD3L
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DJH9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DJH9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DJH9
Splice isoforms : SwissVarP0DJH9
PhosPhoSitePlusP0DJH9
Domains : Interpro (EBI)RD3   
Domain families : Pfam (Sanger)RD3 (PF14473)   
Domain families : Pfam (NCBI)pfam14473   
Domain structure : Prodom (Prabi Lyon)PD822638 (PD822638)   
Conserved Domain (NCBI)RD3L
DMDM Disease mutations647286
Blocks (Seattle)RD3L
SuperfamilyP0DJH9
Human Protein AtlasENSG00000227729
Peptide AtlasP0DJH9
IPIIPI00983190   
Protein Interaction databases
DIP (DOE-UCLA)P0DJH9
IntAct (EBI)P0DJH9
FunCoupENSG00000227729
BioGRIDRD3L
STRING (EMBL)RD3L
ZODIACRD3L
Ontologies - Pathways
QuickGOP0DJH9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkRD3L
Atlas of Cancer Signalling NetworkRD3L
Wikipedia pathwaysRD3L
Orthology - Evolution
OrthoDB647286
GeneTree (enSembl)ENSG00000227729
Phylogenetic Trees/Animal Genes : TreeFamRD3L
HOVERGENP0DJH9
HOGENOMP0DJH9
Homologs : HomoloGeneRD3L
Homology/Alignments : Family Browser (UCSC)RD3L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRD3L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RD3L
dbVarRD3L
ClinVarRD3L
1000_GenomesRD3L 
Exome Variant ServerRD3L
ExAC (Exome Aggregation Consortium)RD3L (select the gene name)
Genetic variants : HAPMAP647286
Genomic Variants (DGV)RD3L [DGVbeta]
DECIPHERRD3L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRD3L 
Mutations
ICGC Data PortalRD3L 
TCGA Data PortalRD3L 
Broad Tumor PortalRD3L
OASIS PortalRD3L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRD3L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRD3L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RD3L
DgiDB (Drug Gene Interaction Database)RD3L
DoCM (Curated mutations)RD3L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RD3L (select a term)
intoGenRD3L
Cancer3DRD3L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRD3L
Genetic Testing Registry RD3L
NextProtP0DJH9 [Medical]
TSGene647286
GENETestsRD3L
Huge Navigator RD3L [HugePedia]
snp3D : Map Gene to Disease647286
BioCentury BCIQRD3L
ClinGenRD3L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD647286
Chemical/Pharm GKB GenePA166049071
Clinical trialRD3L
Miscellaneous
canSAR (ICR)RD3L (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRD3L
EVEXRD3L
GoPubMedRD3L
iHOPRD3L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:50:43 CEST 2017

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